# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
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# query HMM file: GNTPAN12210_noloxo.hmm
# target sequence database: loxo.fasta
# output directed to file: loxo_std.out
# max ASCII text line length: unlimited
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Query: GNTPAN12210_noloxo [M=779]
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
0 1563.7 0.0 0 1563.4 0.0 1.0 1 L oxodonta_africana@ENSLAFP00000006713_that is really long with strange stuff
Domain annotation for each sequence (and alignments):
>> L oxodonta_africana@ENSLAFP00000006713_that is really long with strange stuff
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 1563.4 0.0 0 0 5 779 .] 20 802 .] 12 802 .] 0.98
Alignments for each domain:
== domain 1 score: 1563.4 bits; conditional E-value: 0
GNTPAN12210_noloxo 5 pgsgaagsg.....aggdparpglsqqqrasqrkaqvralprakkleklgvfsackanesckcngwknpnpptaprmdlqqpaaslsepcrscshaladhvshlenvseeeinrllgmvvdvenlfmsvhkeedtdtkqvyfylfkllrkcilqmgkpvvegslgsppfekpnieqgvlnfvqykfshlppkerqtmvelskmfllclnywkletpsqfrqrsqnddvagykvnytrwlcychvpqscdslpryettqvfgrsllrsiftvtrrqllekfrvekdklvpekrtlilthfpkflsmleeeiygenspiweqdftmpasegtqlgirpavvstvsvpsspsfseqlnggssspaskdssglepnpgekrklpesltledakrprvmgdipmelvnevmltitdpaamlgpetsllsanaardetarleerrgiiefhvignslnqkpnkkilmwlvglqnvfshqlprmpkeyitrlvfdpkhktlalikdgrviggicfrmfptqgfteivfcavtsneqvkgygthlmnhlkeyhikhnilnfltyadeyaigyfkkqgfskdikvpksrylgyikdyegatlmecelnpripytelshiikkqkeiikklierkqaqirkvypglscfkegvrqipiesipgiretgwkpsgkekgkelkdpdqlystlknllaqikshpsawpfmepvkkseapdyyevirfpi...dlktmterlknryyvtkklfmadlqrvitncreynppeseyckcanilekffyfklkeaglidk 779
+g+g++g+g +ggdparpglsqqqrasqrkaqvr+lprakkleklgvfsackane+ckcngwknp+pptaprmdlqqpaa+lse crsc+h+ladhvshlenvse+einrllgmvvdvenlfmsvhkeedtdtkqvyfylfkllrkcilqm++pvvegslgsppfekpnieqgvlnfvqykfshl+p+erqtm+elskmfllclnywkletp+qfrqrsq +dva+ykvnytrwlcychvpqscdslpryett+vfgrsllrsiftvtrrqllekfrvekdklvpekrtlilthfpkflsmleeeiyg nspiwe++ftmp+segtql++rpa+vs+++vps+p fs+ ++ggs+s+ s+ds+g+ep+pgekrklpe+ltledakr+rvmgdipmelvnevmltitdpaamlgpetsllsanaardetarleerrgiiefhvignsl++k+n+++l+wlvglqnvfshqlprmpkeyi+rlvfdpkhktlalikdgrviggicfrmfptqgfteivfcavtsneqvkgygthlmnhlkeyhikhnil+fltyadeyaigyfkkqgfskdikvpksrylgyikdyegatlmecelnpripytelshiikkqkeiikklierkqaqirkvypglscfkegvrqip+es+pgiretgwkp+gkekgkelkdpdqly+tlknllaqikshpsawpfmepvkkseapdyyevirfpi dlktmterl++ryyvt+klf+adlqrvi+ncreynpp+seyc+ca++lekffyfklke+glidk
L 20 TGTGGPGVGsggtgSGGDPARPGLSQQQRASQRKAQVRGLPRAKKLEKLGVFSACKANETCKCNGWKNPKPPTAPRMDLQQPAANLSELCRSCEHPLADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMTRPVVEGSLGSPPFEKPNIEQGVLNFVQYKFSHLAPRERQTMFELSKMFLLCLNYWKLETPAQFRQRSQAEDVATYKVNYTRWLCYCHVPQSCDSLPRYETTHVFGRSLLRSIFTVTRRQLLEKFRVEKDKLVPEKRTLILTHFPKFLSMLEEEIYGANSPIWESGFTMPPSEGTQLVPRPATVSAAVVPSTPIFSPTMGGGSNSSLSLDSGGAEPMPGEKRKLPENLTLEDAKRLRVMGDIPMELVNEVMLTITDPAAMLGPETSLLSANAARDETARLEERRGIIEFHVIGNSLTPKANRRVLLWLVGLQNVFSHQLPRMPKEYIARLVFDPKHKTLALIKDGRVIGGICFRMFPTQGFTEIVFCAVTSNEQVKGYGTHLMNHLKEYHIKHNILYFLTYADEYAIGYFKKQGFSKDIKVPKSRYLGYIKDYEGATLMECELNPRIPYTELSHIIKKQKEIIKKLIERKQAQIRKVYPGLSCFKEGVRQIPVESVPGIRETGWKPLGKEKGKELKDPDQLYTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIgrpDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPPDSEYCRCASALEKFFYFKLKEGGLIDK 802
45555554455665789**************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************87779*************************************************************98 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (779 nodes)
Target sequences: 1 (802 residues searched)
Passed MSV filter: 1 (1); expected 0.0 (0.02)
Passed bias filter: 1 (1); expected 0.0 (0.02)
Passed Vit filter: 1 (1); expected 0.0 (0.001)
Passed Fwd filter: 1 (1); expected 0.0 (1e-05)
Initial search space (Z): 1 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.04
# Mc/sec: 15.62
//
[ok]