# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: aligned-nuc.hmm
# target sequence database: aligned-nuc_target.fasta
# output directed to file: aligned-nuc_notextw.out
# per-seq hits tabular output: aligned-nuc_table.out
# per-dom hits tabular output: aligned-nuc_domtable.out
# max ASCII text line length: unlimited
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: aligned-nuc [M=471]
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1e-116 380.3 0.8 1.1e-116 380.2 0.8 1.0 1 Salamandra_salamandra_Miguel@3508991
1e-116 380.3 0.8 1.3e-116 380.0 0.8 1.0 1 Salamandra_salamandra_Galtier@2928138
2.2e-116 379.2 0.7 2.4e-116 379.1 0.7 1.0 1 Salamandra_atra@2661876
2.6e-116 379.0 0.7 2.9e-116 378.8 0.7 1.0 1 Lyciasalamandra_atifi@2537255
2.6e-116 379.0 0.7 2.9e-116 378.8 0.7 1.0 1 Lyciasalamandra_billae@2556928
3e-116 378.8 0.7 3.3e-116 378.6 0.7 1.0 1 Salamandra_lanzai@2861447
3.3e-116 378.7 0.8 3.6e-116 378.5 0.8 1.0 1 Salamandra_algira@2332629
1.7e-115 376.3 0.8 1.9e-115 376.2 0.8 1.0 1 Salamandra_infraimmaculata@3570305
2e-115 376.1 0.7 2.2e-115 375.9 0.7 1.0 1 Salamandra_corsica@2906900
Domain annotation for each sequence (and alignments):
>> Salamandra_salamandra_Miguel@3508991
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 380.2 0.8 1.1e-116 1.1e-116 2 470 .. 2 470 .. 1 471 [] 0.96
Alignments for each domain:
== domain 1 score: 380.2 bits; conditional E-value: 1.1e-116
aligned-nuc 2 gcatgtttacctctaagctgtttacactggtgctggtggttcagcccaagcaaattcttttgggcatgaagaaacgtggattcggtgctggacgatggaatggctttggtgggaaggtacaaaaaggcgagaccattgaggaagcagcaaagagggaactgttggaagagagtggcctgacagtagatgagctacacaagattggtaacatcaagtttgaatttgttggcagcacagagttgatggatgtccacatttttcgagcagacaactattctggcgaaccaacagaaagtgaagaaatgcgccctcagtggtttgagctggaaaacgtccccttcgtgcagatgtggccggacgatgtatactggtttccaattatgcttcaaaaaaagaagttccttggctatttcaaattacagggacatgacacgatcctggattacgcacttgaagaggtggacgaaat 470
gcatgtttacctctaagctgtttacactggtgctggtggttcagcccaagcaaattcttttgggcatgaagaaacgtggattcggtgctggacgatggaatggctttggtgggaaggtacaaaaaggcgagaccattgaggaagcagcaaagagggaactgttggaagagagtggcctgacagtagatgagctacacaagattggtaacatcaagtttgaatttgttggcagcacagagttgatggatgtccacatttttcgagcagacaactattctggcgaaccaacagaaagtgaagaaatgcgccctcagtggtttgagctggaaaacgtccccttcgtgcagatgtggccggacgatgtatactggtttccaattatgcttcaaaaaaagaagttccttggctatttcaaattacagggacatgacacgatcctggattac+cacttgaagaggtggacgaaat
Salamandra_salamandra_Miguel@3508991 2 GCATGTTTACCTCTAAGCTGTTTACACTGGTGCTGGTGGTTCAGCCCAAGCAAATTCTTTTGGGCATGAAGAAACGTGGATTCGGTGCTGGACGATGGAATGGCTTTGGTGGGAAGGTACAAAAAGGCGAGACCATTGAGGAAGCAGCAAAGAGGGAACTGTTGGAAGAGAGTGGCCTGACAGTAGATGAGCTACACAAGATTGGTAACATCAAGTTTGAATTTGTTGGCAGCACAGAGTTGATGGATGTCCACATTTTTCGAGCAGACAACTATTCTGGCGAACCAACAGAAAGTGAAGAAATGCGCCCTCAGTGGTTTGAGCTGGAAAACGTCCCCTTCGTGCAGATGTGGCCGGACGATGTATACTGGTTTCCAATTATGCTTCAAAAAAAGAAGTTCCTTGGCTATTTCAAATTACAGGGACATGACACGATCCTGGATTACACACTTGAAGAGGTGGACGAAAT 470
78999999*************9***********************9******9****999999*********9********************************9*****9********99999************************9****9***********9*************************************************9*****9********************************99999********************************9********9******9*********9********9999***9999**********************************9**************9888889****************9***99************************************************99876 PP
>> Salamandra_salamandra_Galtier@2928138
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 380.0 0.8 1.3e-116 1.3e-116 2 470 .. 14 482 .. 13 483 .] 0.96
Alignments for each domain:
== domain 1 score: 380.0 bits; conditional E-value: 1.3e-116
aligned-nuc 2 gcatgtttacctctaagctgtttacactggtgctggtggttcagcccaagcaaattcttttgggcatgaagaaacgtggattcggtgctggacgatggaatggctttggtgggaaggtacaaaaaggcgagaccattgaggaagcagcaaagagggaactgttggaagagagtggcctgacagtagatgagctacacaagattggtaacatcaagtttgaatttgttggcagcacagagttgatggatgtccacatttttcgagcagacaactattctggcgaaccaacagaaagtgaagaaatgcgccctcagtggtttgagctggaaaacgtccccttcgtgcagatgtggccggacgatgtatactggtttccaattatgcttcaaaaaaagaagttccttggctatttcaaattacagggacatgacacgatcctggattacgcacttgaagaggtggacgaaat 470
gcatgtttacctctaagctgtttacactggtgctggtggttcagcccaagcaaattcttttgggcatgaagaaacgtggattcggtgctggacgatggaatggctttggtgggaaggtacaaaaaggcgagaccattgaggaagcagcaaagagggaactgttggaagagagtggcctgacagtagatgagctacacaagattggtaacatcaagtttgaatttgttggcagcacagagttgatggatgtccacatttttcgagcagacaactattctggcgaaccaacagaaagtgaagaaatgcgccctcagtggtttgagctggaaaacgtccccttcgtgcagatgtggccggacgatgtatactggtttccaattatgcttcaaaaaaagaagttccttggctatttcaaattacagggacatgacacgatcctggattac+cacttgaagaggtggacgaaat
Salamandra_salamandra_Galtier@2928138 14 GCATGTTTACCTCTAAGCTGTTTACACTGGTGCTGGTGGTTCAGCCCAAGCAAATTCTTTTGGGCATGAAGAAACGTGGATTCGGTGCTGGACGATGGAATGGCTTTGGTGGGAAGGTACAAAAAGGCGAGACCATTGAGGAAGCAGCAAAGAGGGAACTGTTGGAAGAGAGTGGCCTGACAGTAGATGAGCTACACAAGATTGGTAACATCAAGTTTGAATTTGTTGGCAGCACAGAGTTGATGGATGTCCACATTTTTCGAGCAGACAACTATTCTGGCGAACCAACAGAAAGTGAAGAAATGCGCCCTCAGTGGTTTGAGCTGGAAAACGTCCCCTTCGTGCAGATGTGGCCGGACGATGTATACTGGTTTCCAATTATGCTTCAAAAAAAGAAGTTCCTTGGCTATTTCAAATTACAGGGACATGACACGATCCTGGATTACACACTTGAAGAGGTGGACGAAAT 482
78999999*************9***********************9******9****999999*********9********************************9*****9********99999************************9****9***********9*************************************************9*****9********************************99999********************************9********9******9*********9********9999***9999**********************************9**************9888889****************9***99************************************************99876 PP
>> Salamandra_atra@2661876
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 379.1 0.7 2.4e-116 2.4e-116 2 470 .. 2 470 .. 1 471 [] 0.96
Alignments for each domain:
== domain 1 score: 379.1 bits; conditional E-value: 2.4e-116
aligned-nuc 2 gcatgtttacctctaagctgtttacactggtgctggtggttcagcccaagcaaattcttttgggcatgaagaaacgtggattcggtgctggacgatggaatggctttggtgggaaggtacaaaaaggcgagaccattgaggaagcagcaaagagggaactgttggaagagagtggcctgacagtagatgagctacacaagattggtaacatcaagtttgaatttgttggcagcacagagttgatggatgtccacatttttcgagcagacaactattctggcgaaccaacagaaagtgaagaaatgcgccctcagtggtttgagctggaaaacgtccccttcgtgcagatgtggccggacgatgtatactggtttccaattatgcttcaaaaaaagaagttccttggctatttcaaattacagggacatgacacgatcctggattacgcacttgaagaggtggacgaaat 470
gcatgtttacctctaagctgtttacactggtgctggtggttcagcccaagcaaattcttttgggcatgaagaaacgtggattcggtgctggacgatggaatggctttggtgggaaggtacaaaaaggcgagaccattgaggaagcagcaaagagggaactgttggaagagagtggcctgacagtagatgagctacacaagattggtaacatcaagtttgaatttgttggcagcacagagttgatggatgtccacatttttcgagcagacaactattctggcgaaccaacagaaagtgaagaaatgcgccctca tggtttgagctggaaaacgtccccttcgtgcagatgtggccggacgatgtatactggtttccaattatgcttcaaaaaaagaagttccttggctatttcaaatt+cagggacatgacacgatcctggattacgcacttgaagaggtggacgaaat
Salamandra_atra@2661876 2 GCATGTTTACCTCTAAGCTGTTTACACTGGTGCTGGTGGTTCAGCCCAAGCAAATTCTTTTGGGCATGAAGAAACGTGGATTCGGTGCTGGACGATGGAATGGCTTTGGTGGGAAGGTACAAAAAGGCGAGACCATTGAGGAAGCAGCAAAGAGGGAACTGTTGGAAGAGAGTGGCCTGACAGTAGATGAGCTACACAAGATTGGTAACATCAAGTTTGAATTTGTTGGCAGCACAGAGTTGATGGATGTCCACATTTTTCGAGCAGACAACTATTCTGGCGAACCAACAGAAAGTGAAGAAATGCGCCCTCAATGGTTTGAGCTGGAAAACGTCCCCTTCGTGCAGATGTGGCCGGACGATGTATACTGGTTTCCAATTATGCTTCAAAAAAAGAAGTTCCTTGGCTATTTCAAATTTCAGGGACATGACACGATCCTGGATTACGCACTTGAAGAGGTGGACGAAAT 470
78999999*************9***********************9******9****999999*********9********************************9*****9********99999************************9****9***********9*************************************************9*****9********************************99999********************************9********9******9****9****9********9999***9999**********************************9**************9888889****************9***99999*********************************************99876 PP
>> Lyciasalamandra_atifi@2537255
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 378.8 0.7 2.9e-116 2.9e-116 2 470 .. 2 470 .. 1 471 [] 0.96
Alignments for each domain:
== domain 1 score: 378.8 bits; conditional E-value: 2.9e-116
aligned-nuc 2 gcatgtttacctctaagctgtttacactggtgctggtggttcagcccaagcaaattcttttgggcatgaagaaacgtggattcggtgctggacgatggaatggctttggtgggaaggtacaaaaaggcgagaccattgaggaagcagcaaagagggaactgttggaagagagtggcctgacagtagatgagctacacaagattggtaacatcaagtttgaatttgttggcagcacagagttgatggatgtccacatttttcgagcagacaactattctggcgaaccaacagaaagtgaagaaatgcgccctcagtggtttgagctggaaaacgtccccttcgtgcagatgtggccggacgatgtatactggtttccaattatgcttcaaaaaaagaagttccttggctatttcaaattacagggacatgacacgatcctggattacgcacttgaagaggtggacgaaat 470
gcatgtttacctctaagctgtttacactggtgctggtggttcagcccaagcaaattcttttgggcatgaagaaacgtggattcggtgctggacgatggaatggctttggtgggaaggtacaaaaaggcgagaccattgaggaagcagcaaagagggaactgttgga+gagagtggcctgacagtagatgagctacacaagattggtaacatcaagtttgaatttgttggcagcacagagttgatgga gtccacatttttcgagcagacaactattctggcgaaccaacagaaagtgaagaaatgcgccctcagtggtttgagctggaaaacgtccccttcgtgcagatgtggccggacgatgtatactggtttccaattatgcttcaaaaaaagaagttccttggctatttcaaatt+cagggacatgacacgatcctggattacgcacttgaagaggtggacgaaat
Lyciasalamandra_atifi@2537255 2 GCATGTTTACCTCTAAGCTGTTTACACTGGTGCTGGTGGTTCAGCCCAAGCAAATTCTTTTGGGCATGAAGAAACGTGGATTCGGTGCTGGACGATGGAATGGCTTTGGTGGGAAGGTACAAAAAGGCGAGACCATTGAGGAAGCAGCAAAGAGGGAACTGTTGGAGGAGAGTGGCCTGACAGTAGATGAGCTACACAAGATTGGTAACATCAAGTTTGAATTTGTTGGCAGCACAGAGTTGATGGAAGTCCACATTTTTCGAGCAGACAACTATTCTGGCGAACCAACAGAAAGTGAAGAAATGCGCCCTCAGTGGTTTGAGCTGGAAAACGTCCCCTTCGTGCAGATGTGGCCGGACGATGTATACTGGTTTCCAATTATGCTTCAAAAAAAGAAGTTCCTTGGCTATTTCAAATTTCAGGGACATGACACGATCCTGGATTACGCACTTGAAGAGGTGGACGAAAT 470
78999999*************9***********************9******9****999999*********9********************************9*****9********99999************************9****9***********99************************************************9*****9************************9*******99999********************************9********9******9*********9********9999***9999**********************************9**************9888889****************9***99999*********************************************99876 PP
>> Lyciasalamandra_billae@2556928
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 378.8 0.7 2.9e-116 2.9e-116 2 470 .. 2 470 .. 1 471 [] 0.96
Alignments for each domain:
== domain 1 score: 378.8 bits; conditional E-value: 2.9e-116
aligned-nuc 2 gcatgtttacctctaagctgtttacactggtgctggtggttcagcccaagcaaattcttttgggcatgaagaaacgtggattcggtgctggacgatggaatggctttggtgggaaggtacaaaaaggcgagaccattgaggaagcagcaaagagggaactgttggaagagagtggcctgacagtagatgagctacacaagattggtaacatcaagtttgaatttgttggcagcacagagttgatggatgtccacatttttcgagcagacaactattctggcgaaccaacagaaagtgaagaaatgcgccctcagtggtttgagctggaaaacgtccccttcgtgcagatgtggccggacgatgtatactggtttccaattatgcttcaaaaaaagaagttccttggctatttcaaattacagggacatgacacgatcctggattacgcacttgaagaggtggacgaaat 470
gcatgtttacctctaagctgtttacactggtgctggtggttcagcccaagcaaattcttttgggcatgaagaaacgtggattcggtgctggacgatggaatggctttggtgggaaggtacaaaaaggcgagaccattgaggaagcagcaaagagggaactgttgga+gagagtggcctgacagtagatgagctacacaagattggtaacatcaagtttgaatttgttggcagcacagagttgatgga gtccacatttttcgagcagacaactattctggcgaaccaacagaaagtgaagaaatgcgccctcagtggtttgagctggaaaacgtccccttcgtgcagatgtggccggacgatgtatactggtttccaattatgcttcaaaaaaagaagttccttggctatttcaaatt+cagggacatgacacgatcctggattacgcacttgaagaggtggacgaaat
Lyciasalamandra_billae@2556928 2 GCATGTTTACCTCTAAGCTGTTTACACTGGTGCTGGTGGTTCAGCCCAAGCAAATTCTTTTGGGCATGAAGAAACGTGGATTCGGTGCTGGACGATGGAATGGCTTTGGTGGGAAGGTACAAAAAGGCGAGACCATTGAGGAAGCAGCAAAGAGGGAACTGTTGGAGGAGAGTGGCCTGACAGTAGATGAGCTACACAAGATTGGTAACATCAAGTTTGAATTTGTTGGCAGCACAGAGTTGATGGAAGTCCACATTTTTCGAGCAGACAACTATTCTGGCGAACCAACAGAAAGTGAAGAAATGCGCCCTCAGTGGTTTGAGCTGGAAAACGTCCCCTTCGTGCAGATGTGGCCGGACGATGTATACTGGTTTCCAATTATGCTTCAAAAAAAGAAGTTCCTTGGCTATTTCAAATTTCAGGGACATGACACGATCCTGGATTACGCACTTGAAGAGGTGGACGAAAT 470
78999999*************9***********************9******9****999999*********9********************************9*****9********99999************************9****9***********99************************************************9*****9************************9*******99999********************************9********9******9*********9********9999***9999**********************************9**************9888889****************9***99999*********************************************99876 PP
>> Salamandra_lanzai@2861447
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 378.6 0.7 3.3e-116 3.3e-116 2 470 .. 2 470 .. 1 471 [] 0.96
Alignments for each domain:
== domain 1 score: 378.6 bits; conditional E-value: 3.3e-116
aligned-nuc 2 gcatgtttacctctaagctgtttacactggtgctggtggttcagcccaagcaaattcttttgggcatgaagaaacgtggattcggtgctggacgatggaatggctttggtgggaaggtacaaaaaggcgagaccattgaggaagcagcaaagagggaactgttggaagagagtggcctgacagtagatgagctacacaagattggtaacatcaagtttgaatttgttggcagcacagagttgatggatgtccacatttttcgagcagacaactattctggcgaaccaacagaaagtgaagaaatgcgccctcagtggtttgagctggaaaacgtccccttcgtgcagatgtggccggacgatgtatactggtttccaattatgcttcaaaaaaagaagttccttggctatttcaaattacagggacatgacacgatcctggattacgcacttgaagaggtggacgaaat 470
gcatgtttacctctaagctgtttacactggtgctggtggttcagcccaagcaaattcttttgggcatgaagaaacgtggattcggtgctggacgatggaatggctttggtgggaaggtacaaaaaggcgagaccattgaggaagcagcaaagagggaactgttggaagagagtggcctgacagtagatgagctacacaagattggtaacatcaagtttgaatttgttggcagcacagagttgatggatgtccacatttttcgagcagacaactattctggcgaaccaacagaaagtgaagaaatgcgccctcagtggtttgagctggaaaacgtccccttcgtgcagatgtggccggacgatgta actggtttccaattatgcttcaaaaaaagaagttccttggctatttcaaattacagggacatgacacgatcctggattac+cacttgaagaggtggacgaaat
Salamandra_lanzai@2861447 2 GCATGTTTACCTCTAAGCTGTTTACACTGGTGCTGGTGGTTCAGCCCAAGCAAATTCTTTTGGGCATGAAGAAACGTGGATTCGGTGCTGGACGATGGAATGGCTTTGGTGGGAAGGTACAAAAAGGCGAGACCATTGAGGAAGCAGCAAAGAGGGAACTGTTGGAAGAGAGTGGCCTGACAGTAGATGAGCTACACAAGATTGGTAACATCAAGTTTGAATTTGTTGGCAGCACAGAGTTGATGGATGTCCACATTTTTCGAGCAGACAACTATTCTGGCGAACCAACAGAAAGTGAAGAAATGCGCCCTCAGTGGTTTGAGCTGGAAAACGTCCCCTTCGTGCAGATGTGGCCGGACGATGTACACTGGTTTCCAATTATGCTTCAAAAAAAGAAGTTCCTTGGCTATTTCAAATTACAGGGACATGACACGATCCTGGATTACACACTTGAAGAGGTGGACGAAAT 470
78999999*************9***********************9******9****999999*********9********************************9*****9********99999************************9****9***********9*************************************************9*****9********************************99999********************************9********9******9*********9********9999***9999***************************9******9**************9888889****************9***99************************************************99876 PP
>> Salamandra_algira@2332629
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 378.5 0.8 3.6e-116 3.6e-116 2 470 .. 2 470 .. 1 471 [] 0.96
Alignments for each domain:
== domain 1 score: 378.5 bits; conditional E-value: 3.6e-116
aligned-nuc 2 gcatgtttacctctaagctgtttacactggtgctggtggttcagcccaagcaaattcttttgggcatgaagaaacgtggattcggtgctggacgatggaatggctttggtgggaaggtacaaaaaggcgagaccattgaggaagcagcaaagagggaactgttggaagagagtggcctgacagtagatgagctacacaagattggtaacatcaagtttgaatttgttggcagcacagagttgatggatgtccacatttttcgagcagacaactattctggcgaaccaacagaaagtgaagaaatgcgccctcagtggtttgagctggaaaacgtccccttcgtgcagatgtggccggacgatgtatactggtttccaattatgcttcaaaaaaagaagttccttggctatttcaaattacagggacatgacacgatcctggattacgcacttgaagaggtggacgaaat 470
gcatgtttacctc aagctgtttacactggtgctggtggttcagcccaagcaaattcttttgggcatgaagaaacgtggattcggtgctggacgatggaatggctttggtgggaaggtacaaaaaggcgagaccattgaggaagcagcaaagagggaactgttggaagagagtggcctgacagtagatgagctacacaagattggtaacatcaagtttgaatttgttggcagcacagagttgatggatgtccacatttttcgagcagacaactattctggcgaaccaacagaaagtgaagaaatgcgccctcagtggtttgagctggaaaacgtccccttcgtgcagatgtggccggacgatgtatactggtttccaattatgcttcaaaaaaagaagttccttggctatttcaaattacagggacatgacacgatcctggattac+cacttgaagaggtggacgaaat
Salamandra_algira@2332629 2 GCATGTTTACCTCGAAGCTGTTTACACTGGTGCTGGTGGTTCAGCCCAAGCAAATTCTTTTGGGCATGAAGAAACGTGGATTCGGTGCTGGACGATGGAATGGCTTTGGTGGGAAGGTACAAAAAGGCGAGACCATTGAGGAAGCAGCAAAGAGGGAACTGTTGGAAGAGAGTGGCCTGACAGTAGATGAGCTACACAAGATTGGTAACATCAAGTTTGAATTTGTTGGCAGCACAGAGTTGATGGATGTCCACATTTTTCGAGCAGACAACTATTCTGGCGAACCAACAGAAAGTGAAGAAATGCGCCCTCAGTGGTTTGAGCTGGAAAACGTCCCCTTCGTGCAGATGTGGCCGGACGATGTATACTGGTTTCCAATTATGCTTCAAAAAAAGAAGTTCCTTGGCTATTTCAAATTACAGGGACATGACACGATCCTGGATTACACACTTGAAGAGGTGGACGAAAT 470
78999999*************9***********************9******9****999999*********9********************************9*****9********99999************************9****9***********9*************************************************9*****9********************************99999********************************9********9******9*********9********9999***9999**********************************9**************9888889****************9***99************************************************99876 PP
>> Salamandra_infraimmaculata@3570305
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 376.2 0.8 1.9e-115 1.9e-115 2 470 .. 2 470 .. 1 471 [] 0.96
Alignments for each domain:
== domain 1 score: 376.2 bits; conditional E-value: 1.9e-115
aligned-nuc 2 gcatgtttacctctaagctgtttacactggtgctggtggttcagcccaagcaaattcttttgggcatgaagaaacgtggattcggtgctggacgatggaatggctttggtgggaaggtacaaaaaggcgagaccattgaggaagcagcaaagagggaactgttggaagagagtggcctgacagtagatgagctacacaagattggtaacatcaagtttgaatttgttggcagcacagagttgatggatgtccacatttttcgagcagacaactattctggcgaaccaacagaaagtgaagaaatgcgccctcagtggtttgagctggaaaacgtccccttcgtgcagatgtggccggacgatgtatactggtttccaattatgcttcaaaaaaagaagttccttggctatttcaaattacagggacatgacacgatcctggattacgcacttgaagaggtggacgaaat 470
gcatgtttacctctaagctgtttacactggtgctggtggttca cccaagcaaattcttttgggcatgaagaaacgtggattcggtgctggacgatggaatggctttggtgggaaggtacaaaaaggcgagaccattgaggaagcagcaaagagggaactgttgga+gagagtggcctgacagtagatgagctacacaagattggtaacatcaagtttgaatttgttggcagcacagagttgatggatgtccacatttttcgagcagacaactattctggcgaaccaacagaaagtgaagaaatgcgccctca tggtttgagctggaaaacgtccccttcgtgcagatgtggccggacgatgtatactggtttccaattatgcttcaaaaaaagaagttccttggctatttcaaatt+cagggacatgacacgatcctggattacgcacttgaagaggtgga gaaat
Salamandra_infraimmaculata@3570305 2 GCATGTTTACCTCTAAGCTGTTTACACTGGTGCTGGTGGTTCAACCCAAGCAAATTCTTTTGGGCATGAAGAAACGTGGATTCGGTGCTGGACGATGGAATGGCTTTGGTGGGAAGGTACAAAAAGGCGAGACCATTGAGGAAGCAGCAAAGAGGGAACTGTTGGAGGAGAGTGGCCTGACAGTAGATGAGCTACACAAGATTGGTAACATCAAGTTTGAATTTGTTGGCAGCACAGAGTTGATGGATGTCCACATTTTTCGAGCAGACAACTATTCTGGCGAACCAACAGAAAGTGAAGAAATGCGCCCTCAATGGTTTGAGCTGGAAAACGTCCCCTTCGTGCAGATGTGGCCGGACGATGTATACTGGTTTCCAATTATGCTTCAAAAAAAGAAGTTCCTTGGCTATTTCAAATTTCAGGGACATGACACGATCCTGGATTACGCACTTGAAGAGGTGGATGAAAT 470
78999999*************9********************99999*****9****999999*********9********************************9*****9********99999************************9****9***********99************************************************9*****9********************************99999********************************9********9******9****9****9********9999***9999**********************************9**************9888889****************9***99999*****************************************999998776 PP
>> Salamandra_corsica@2906900
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 375.9 0.7 2.2e-115 2.2e-115 2 470 .. 2 470 .. 1 471 [] 0.96
Alignments for each domain:
== domain 1 score: 375.9 bits; conditional E-value: 2.2e-115
aligned-nuc 2 gcatgtttacctctaagctgtttacactggtgctggtggttcagcccaagcaaattcttttgggcatgaagaaacgtggattcggtgctggacgatggaatggctttggtgggaaggtacaaaaaggcgagaccattgaggaagcagcaaagagggaactgttggaagagagtggcctgacagtagatgagctacacaagattggtaacatcaagtttgaatttgttggcagcacagagttgatggatgtccacatttttcgagcagacaactattctggcgaaccaacagaaagtgaagaaatgcgccctcagtggtttgagctggaaaacgtccccttcgtgcagatgtggccggacgatgtatactggtttccaattatgcttcaaaaaaagaagttccttggctatttcaaattacagggacatgacacgatcctggattacgcacttgaagaggtggacgaaat 470
gcatgtttacctctaagctgtttacactggtgctggtggttca cccaagcaaattcttttgggcatgaagaaacgtggattcggtgctggacgatggaatggctttggtgggaaggtacaaaaaggcgagaccattgaggaagcagcaaagagggaactgttgga+gagagtggcctgacagtagatgagctacacaagattggtaacatcaagtttgaatttgttggcagcacaga ttgatggatgtccacatttttcgagcagacaactattctggcgaaccaacagaaagtgaagaaatgcgccctcagtggtttgagctggaaaacgtccccttcgtgcagatgtggccggacgatgtatactggtttccaattatgcttcaaaaaaagaagttccttggctatttcaaattacagggaca gacacgatcctggattacgcacttgaagaggtggacgaaat
Salamandra_corsica@2906900 2 GCATGTTTACCTCTAAGCTGTTTACACTGGTGCTGGTGGTTCAACCCAAGCAAATTCTTTTGGGCATGAAGAAACGTGGATTCGGTGCTGGACGATGGAATGGCTTTGGTGGGAAGGTACAAAAAGGCGAGACCATTGAGGAAGCAGCAAAGAGGGAACTGTTGGAGGAGAGTGGCCTGACAGTAGATGAGCTACACAAGATTGGTAACATCAAGTTTGAATTTGTTGGCAGCACAGAATTGATGGATGTCCACATTTTTCGAGCAGACAACTATTCTGGCGAACCAACAGAAAGTGAAGAAATGCGCCCTCAGTGGTTTGAGCTGGAAAACGTCCCCTTCGTGCAGATGTGGCCGGACGATGTATACTGGTTTCCAATTATGCTTCAAAAAAAGAAGTTCCTTGGCTATTTCAAATTACAGGGACACGACACGATCCTGGATTACGCACTTGAAGAGGTGGACGAAAT 470
78999999*************9********************99999*****9****999999*********9********************************9*****9********99999************************9****9***********99************************************************9*****9**************999***************99999********************************9********9******9*********9********9999***9999**********************************9**************9888889****************9***99******9*****************************************99876 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (471 nodes)
Target sequences: 9 (4251 residues searched)
Passed MSV filter: 9 (1); expected 0.2 (0.02)
Passed bias filter: 9 (1); expected 0.2 (0.02)
Passed Vit filter: 9 (1); expected 0.0 (0.001)
Passed Fwd filter: 9 (1); expected 0.0 (1e-05)
Initial search space (Z): 9 [actual number of targets]
Domain search space (domZ): 9 [number of targets reported over threshold]
# CPU time: 0.06u 0.00s 00:00:00.06 Elapsed: 00:00:00.06
# Mc/sec: 33.37
//
[ok]