query_sequence,base_type,reverse_complement,genome_start,genome_end,polyprotein,start,end,region_names,similarity_to_hxb2,alignment,hxb2_sequence
AGCAATCAGATGGTCAGCCAAAATTGCCCTATAGTGCAGAACATCCAGGGGCAAGTGGTACATCAGGCCATATCACCTAGAACTTTAAATGCA,nucleotide,0,1162,1251,Gag,373,462,"Gag p17 p24",94.6," Query AGCAATCAGA TGGTCAGCCA AAATTGCCCT ATAGTGCAGA ACATCCAGGG 50
:::::::: ::::::::: ::::: :::: :::::::::: ::::::::::
HXB2 AGCAATCA-- -GGTCAGCCA AAATTACCCT ATAGTGCAGA ACATCCAGGG 1208
Query GCAAGTGGTA CATCAGGCCA TATCACCTAG AACTTTAAAT GCA 93
:::: ::::: :::::::::: :::::::::: :::::::::: :::
HXB2 GCAAATGGTA CATCAGGCCA TATCACCTAG AACTTTAAAT GCA 1251",AGCAATCA---GGTCAGCCAAAATTACCCTATAGTGCAGAACATCCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCA