LOCUS NC_012004 2095 bp DNA linear BCT 07-MAY-2009
DEFINITION Streptococcus uberis 0140J, complete genome.
ACCESSION NC_012004 REGION: 843183..845277
VERSION NC_012004.1 GI:222152201
DBLINK Project:353
KEYWORDS complete genome.
SOURCE Streptococcus uberis 0140J
ORGANISM Streptococcus uberis 0140J
Bacteria; Firmicutes; Lactobacillales; Streptococcaceae;
Streptococcus.
REFERENCE 1
AUTHORS Ward,P.N., Holden,M.T.G., Leigh,J.A., Lennard,N., Bignell,A.,
Barron,A., Clark,L., Quail,M.A., Woodward,J., Barrell,B.G.,
Egan,S.A., Field,T.R., Maskell,D., Kehoe,M., Dowson,C.G.,
Chanter,N., Whatmore,A.M., Bentley,S.D. and Parkhill,J.
TITLE Evidence for niche adaptation in the genome of the bovine pathogen
Streptococcus uberis
JOURNAL BMC Genet. 10 (54) (2009) In press
REFERENCE 2 (bases 1 to 2095)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (29-JAN-2009) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2095)
AUTHORS Holden,M.T.G.
TITLE Direct Submission
JOURNAL Submitted (10-MAR-2008) Holden M.T.G., Pathogen Genomics, Sanger
Institute Wellcome Trust, Wellcome Trust Genome Campus, Hinxton,
Cambridge, CB10 1SA, UNITED KINGDOM
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from AM946015.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..2095
/organism="Streptococcus uberis 0140J"
/mol_type="genomic DNA"
/strain="0140J"
/db_xref="taxon:218495"
gene <1..958
/locus_tag="SUB0865"
/db_xref="GeneID:7391352"
CDS <1..958
/locus_tag="SUB0865"
/EC_number="1.7.1.7"
/codon_start=1
/transl_table=11
/product="GMP reductase"
/protein_id="YP_002562194.1"
/db_xref="GI:222153017"
/db_xref="GeneID:7391352"
/translation="MFNDMPVFDYEDIQLIPNKCIINSRSEADTSVQLGKYSFKLPVI
PANMQTIIDETIAEQLAKDGYFYIMHRFDEESRKPFIKRMHEQNLIASISVGVKEYEY
DFVTSLKEDAPEFVTIDIAHGHANSVIKMIQHIKKELPETFVIAGNVGTPEAVRELEN
AGADATKVGIGPGKVCITKVKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIA
KSIRFGATMVMIGSLFAGHLESPGKLVEIDGETFKEYYGSASEYQKGEHKNVEGKKIL
LPTKGHLSDTLTEMKQDLQSSISYAGGNDLAALRRVDYVIVKNSIWNGDSI"
gene 1001..1095
/locus_tag="SUBs03"
/db_xref="GeneID:7391353"
misc_RNA 1001..1095
/locus_tag="SUBs03"
/note="Purine riboswitch (RF00167) as predicted by Rfam,
score 59.77"
/db_xref="GeneID:7391353"
gene 1180..1761
/gene="xpt"
/locus_tag="SUB0866"
/db_xref="GeneID:7392114"
CDS 1180..1761
/gene="xpt"
/locus_tag="SUB0866"
/EC_number="2.4.2.-"
/codon_start=1
/transl_table=11
/product="xanthine phosphoribosyltransferase"
/protein_id="YP_002562195.1"
/db_xref="GI:222153018"
/db_xref="GeneID:7392114"
/translation="MKLLEERIIKDGNVLGENILKVDSFLTHQVDYHLMRDIGKVFAE
SYADAGITKVVTIEASGIAPAVYVAEALKVPMIFAKKHKNITMTEGILTAEVYSFTKQ
VTSTVSIASKFLSKDDKVLIIDDFLANGQAAKGLIEIIQQAGASVEGVGIVIEKSFQD
GRQLLENMGVKVTSLARIKNFENGRLNFMEADA"
gene 1761..>2095
/gene="pbuX"
/locus_tag="SUB0867"
/db_xref="GeneID:7392109"
CDS 1761..>2095
/gene="pbuX"
/locus_tag="SUB0867"
/codon_start=1
/transl_table=11
/product="xanthine permease"
/protein_id="YP_002562196.1"
/db_xref="GI:222153019"
/db_xref="GeneID:7392109"
/translation="MQTETQHSHSQSAILGLQHLLSMYAGSILVPIMIAGALGYSAKE
LTYLISTDIFMCGLATFLQLQFNKYFGVGLPVVLGCAFQSVAPLSIIGAKQGSGAMFG
ALIASGLFVILIAGVFSKIARFFPAIVTGSVITTIGLSLIPVAMGNMGNNTPKPTGQS
LILAFLTIFIILAIQKFATGFIKSIAILIGLIAGTLVAALMGLVDTSAVSSAPWVHVP
TPFYFGAPKFEITSIVMMCIIAIVSMVESTGVYLALSDITDETLDSNRLRNGYRAEGL
AVLLGGIFNTFPYTGFSQNVGLVRLSGIKTRRPIYYTAAFLVVIGLLPKFGALAQMIP
SPVLGGAMLVLFGMVALQGMQMLNRVDFQGNEHNFIIAAVSISAGVGFNGTNLFASLP
STANMFLTNGIVIATVTAVLLNLIFNGNTKEN"
ORIGIN
1 ttatgaagat attcaattaa ttcctaataa gtgtatcatt aatagtcgtt ctgaggctga
61 tacaagcgtt caacttggaa aatacagttt taaattacca gtcataccag ctaatatgca
121 aacgatcatt gacgaaacga ttgctgaaca attagctaaa gatggttatt tttatatcat
181 gcatcgattc gatgaagaaa gccgtaagcc atttattaag cgcatgcatg agcaaaactt
241 gattgcttcc atttcagttg gtgtaaagga atatgaatac gattttgtca cttctttaaa
301 agaagatgcc cctgaatttg tgacaattga tatcgcccat ggacacgcca atagtgttat
361 caagatgatt cagcacatca aaaaagaatt accagagaca tttgttatcg ctggcaatgt
421 tgggacacct gaagcagtac gtgaattgga aaatgcagga gcagatgcaa caaaagttgg
481 catcggacct ggtaaagtat gtatcacaaa agttaaaact ggttttggaa caggtggctg
541 gcaattagct gctttacgtt ggtgtgccaa agctgcgcgt aaaccaataa tagcggatgg
601 tggtattcgc actcatggag atattgccaa gtctatccga tttggtgcaa ctatggtcat
661 gattggttcg ctttttgcag gacatcttga aagtcctggt aaactcgttg aaatcgatgg
721 tgaaaccttt aaagaatact atggttcagc atctgagtat caaaagggag aacacaaaaa
781 tgttgaaggt aaaaaaatct tattaccaac aaaaggtcat ctttcggata ccttaacaga
841 aatgaaacaa gatttgcaat cctcaatttc atatgcggga ggaaatgatt tagctgctct
901 tcgtcgcgtc gattacgtta ttgtcaaaaa ttccatctgg aatggtgatt ctatctaaga
961 aggtcttgaa ttttcagaaa ttcgtgatat gatagtcata acaaaaattg aataaactac
1021 ttatttatac tgtgaattgg cgcagtgttt ctacaagaca ccgtaatgtc taacaataag
1081 taagctaaaa agcttgcttg gttttaacct tgcaaagcag gaggagtagt gtcctcttgt
1141 tttgtggcaa gctttttttg tttttagaaa gaggtcatca tgaaattact tgaagaacgt
1201 attataaaag atggtaacgt tctaggcgaa aacattttaa aggttgatag ttttctaaca
1261 caccaagtgg attatcactt gatgcgtgac attggtaaag tttttgctga atcatatgcg
1321 gatgctggta tcacgaaggt tgtgacaatc gaagcatctg gtattgctcc agccgtttat
1381 gtcgcggaag ctttaaaagt ccctatgatc tttgcaaaga aacataaaaa tatcaccatg
1441 accgaaggta ttttaaccgc ggaggtatac tcatttacta aacaggtaac cagcacggtt
1501 tctattgcaa gtaaattttt gagtaaagat gataaagtct taattattga tgacttttta
1561 gctaatggtc aagccgcaaa aggcctaatt gaaattattc aacaagcggg tgccagtgtt
1621 gaaggtgttg gcattgtgat tgaaaagtca tttcaagatg gtcgtcaatt acttgaaaat
1681 atgggagtta aggttacttc tctagcacgt atcaaaaatt ttgaaaatgg aagattaaac
1741 tttatggagg ccgacgcata atgcaaacgg aaacacaaca ttcacattca caatcagcga
1801 ttttaggatt acaacattta ttatcaatgt atgctggttc tattctagtt cccatcatga
1861 ttgctggagc tttaggttac tctgctaaag aattgactta tttgatttca acagatattt
1921 tcatgtgtgg ccttgcaact tttttacaat tgcaatttaa taagtacttt ggagtgggac
1981 tacctgtcgt tcttggttgt gcttttcaat cagtggcacc tctatcaatt attggggcta
2041 aacaaggttc tggtgctatg tttggtgcct tgattgcctc aggtcttttt gtcat
//