;
; Generated at: 2015-06-21T11:15:36
; This file was generated with the following options
;	--workflow	drake.yml
;

;
; Samples: test1, test2
;
;
; Starting Workflow
;

;
; Starting backup
;



;
; Variables 
; Indir: /home/guests/jir2004/workflow
; Outdir: /home/guests/jir2004/workflow/output/backup
; Local Variables:
;	INPUT: {$self->indir}/{$sample}.csv
;	OUTPUT: {$self->outdir}/{$sample}.csv
;	thing: other thing
;

/home/guests/jir2004/workflow/output/backup/test1.csv <- /home/guests/jir2004/workflow/test1.csv
	cp $INPUT $OUTPUT

/home/guests/jir2004/workflow/output/backup/test2.csv <- /home/guests/jir2004/workflow/test2.csv
	cp $INPUT $OUTPUT


;
; Ending backup
;


;
; Starting grep_VARA
;



;
; Variables 
; Indir: /home/guests/jir2004/workflow/output/backup
; Outdir: /home/guests/jir2004/workflow/output/grep_vara
; Local Variables:
;	OUTPUT: {$self->outdir}/{$sample}.grep_VARA.csv
;	INPUT: {$self->indir}/{$sample}.csv
;

/home/guests/jir2004/workflow/output/grep_vara/test1.grep_VARA.csv <- /home/guests/jir2004/workflow/output/backup/test1.csv
	echo "Working on /home/guests/jir2004/workflow/output/backup/test1csv"
	grep -i "VARA" /home/guests/jir2004/workflow/output/backup/test1.csv >> /home/guests/jir2004/workflow/output/grep_vara/test1.grep_VARA.csv \
	|| touch /home/guests/jir2004/workflow/output/grep_vara/test1.grep_VARA.csv

/home/guests/jir2004/workflow/output/grep_vara/test2.grep_VARA.csv <- /home/guests/jir2004/workflow/output/backup/test2.csv
	echo "Working on /home/guests/jir2004/workflow/output/backup/test2csv"
	grep -i "VARA" /home/guests/jir2004/workflow/output/backup/test2.csv >> /home/guests/jir2004/workflow/output/grep_vara/test2.grep_VARA.csv \
	|| touch /home/guests/jir2004/workflow/output/grep_vara/test2.grep_VARA.csv


;
; Ending grep_VARA
;


;
; Starting grep_VARB
;



;
; Variables 
; Indir: /home/guests/jir2004/workflow/output/grep_vara
; Outdir: /home/guests/jir2004/workflow/output/grep_varb
; Local Variables:
;	OUTPUT: {$self->outdir}/{$sample}.grep_VARA.grep_VARB.csv
;	INPUT: {$self->indir}/{$sample}.grep_VARA.csv
;

/home/guests/jir2004/workflow/output/grep_varb/test1.grep_VARA.grep_VARB.csv <- /home/guests/jir2004/workflow/output/grep_vara/test1.grep_VARA.csv
	grep -i "VARB" /home/guests/jir2004/workflow/output/grep_vara/test1.grep_VARA.csv >> /home/guests/jir2004/workflow/output/grep_varb/test1.grep_VARA.grep_VARB.csv || touch /home/guests/jir2004/workflow/output/grep_varb/test1.grep_VARA.grep_VARB.csv

/home/guests/jir2004/workflow/output/grep_varb/test2.grep_VARA.grep_VARB.csv <- /home/guests/jir2004/workflow/output/grep_vara/test2.grep_VARA.csv
	grep -i "VARB" /home/guests/jir2004/workflow/output/grep_vara/test2.grep_VARA.csv >> /home/guests/jir2004/workflow/output/grep_varb/test2.grep_VARA.grep_VARB.csv || touch /home/guests/jir2004/workflow/output/grep_varb/test2.grep_VARA.grep_VARB.csv


;
; Ending grep_VARB
;

;
; Ending Workflow
;