NAME

Bio::AssemblyImprovement::Util::OrderContigsByLength - Sorts a fasta file by sequence length

VERSION

version 1.160490

SYNOPSIS

$sort_contigs = Bio::AssemblyImprovement::Util::OrderContigsByLength->new( input_filename => 'input_file.fa' );

# get/set the output filename $sort_contigs->output_filename('my_output_file.fa');

# set rename contigs $sort_contigs->contig_basename('scaffold');

# sort contigs $sort_contigs->run();

AUTHOR

Andrew J. Page <ap13@sanger.ac.uk>

COPYRIGHT AND LICENSE

This software is Copyright (c) 2012 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

The GNU General Public License, Version 3, June 2007