NAME

Bio::Das::ProServer::SourceAdaptor::simple_interaction

VERSION

$LastChangedRevision: 688 $

SYNOPSIS

Interactions involving 001:
<host>/das/<source>/interaction?interactor=001

Interactions between 001 and 002
<host>/das/<source>/interaction?interactor=001;interactor=002

Interactions with some form of evidence:
<host>/das/<source>/interaction?interactor=001;detail=property:evidence

Interactions of a specific type:
<host>/das/<source>/interaction?interactor=001;detail=property:type,value:foo

DESCRIPTION

Serves up interaction DAS responses, using a file-based transport.

SUBROUTINES/METHODS

capabilities

build_interaction

DIAGNOSTICS

CONFIGURATION AND ENVIRONMENT

[simple_interaction]
adaptor               = simple_interaction
state                 = on
transport             = file
filename              = /data/interactions.txt
interactors.filename  = /data/interactors.txt
coordinates           = MyCoordSys -> 001

Tab-separated file formats:

--interactors.txt--
id	label	dbSource	dbSourceCvId	dbVersion	dbAccession	dbCoordSys	sequence	property	value	propertyCvId	valueCvId	start	end	startStatus	endStatus	startStatusCvId	endStatusCvId

--interactions.txt--
interactor,interactor,..(sorted)	label	dbSource	dbSourceCvId	dbVersion	dbAccession	property	value	propertyCvId	valueCvId

DEPENDENCIES

Bio::Das::ProServer::SourceAdaptor

INCOMPATIBILITIES

None reported

BUGS AND LIMITATIONS

None reported

AUTHOR

Andy Jenkinson <andy.jenkinson@ebi.ac.uk>

LICENSE AND COPYRIGHT

Copyright (c) 2007 EMBL-EBI