NAME
Bio::ViennaNGS::Feature - A Moose wrapper for BED6-type genomic intervals.
SYNOPSIS
use Bio::ViennaNGS::Feature;
my $feat = Bio::ViennaNGS::Feature->new(chromosome => "chr1",
start => "1200",
end => "4300",
strand => "+",
name => "foobar",
score => "100",
);
$feat->dump();DESCRIPTION
This module provides an object-oriented interface for storing genomic intervals characterized via chromosome, start position, end position, name, score and strand. As such, it can be regarded a simple wrapper for BED6 elements.
This class inherits from Bio::ViennaNGS::MinimalFeature and is the base classs for Bio::ViennaNGS::FeatureChain.
METHODS
- dump()
-
Title : dump
Usage :
$obj->dump;Function: Print a tab-separated representation of
$obj(a BED6 line).
SEE ALSO
AUTHORS
Michael T. Wolfinger <michael@wolfinger.eu>
COPYRIGHT AND LICENSE
Copyright (C) 2014-2018 Michael T. Wolfinger <michael@wolfinger.eu>
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself, either Perl version 5.10.0 or, at your option, any later version of Perl 5 you may have available.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.