NAME
extract-ali.pl - Extract sequences from a FASTA database file based on id lists
VERSION
version 0.242020
USAGE
extract-ali.pl <infiles> --database=<file> [optional arguments]REQUIRED ARGUMENTS
- <infiles>
-
Path to input IDL files [repeatable argument].
- --database=<file>
-
Path to the FASTA file containing the sequence database.
OPTIONAL ARGUMENTS
- --truncate-ids
-
Truncate database ids on first whitespace before extraction [default: no].
- --reorder
-
Reorder sequences following list [default: no].
- --version
- --usage
- --help
- --man
-
Print the usual program information
AUTHOR
Denis BAURAIN <denis.baurain@uliege.be>
COPYRIGHT AND LICENSE
This software is copyright (c) 2013 by University of Liege / Unit of Eukaryotic Phylogenomics / Denis BAURAIN.
This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.