NAME

lapidary - Determine the read coverage and identity to a protein database using diamond

DESCRIPTION

Determine the read coverage and identity of reads from fastq files to a protein database using diamond and reports the output to a file

SYNOPSIS

$ lapidary -read_1 Examples/Reads/Paired_reads_1.fq.gz -read_2 Examples/Reads/Paired_reads_2.fq.gz -read_type paired -db Examples/Amino_acid_database.fasta
...
Total time = 5.668s
Reported 613 pairwise alignments, 613 HSPs.
613 queries aligned.

AUTHOR

Samuel Bloomfield

LICENSE

GPL_3

INSTALLATION

Using cpan:

$ cpan App::lapidary

Manual install:

$ perl Makefile.PL
$ make
$ make install

To install App::lapidary, copy and paste the appropriate command in to your terminal.

cpanm

cpanm App::lapidary

CPAN shell

perl -MCPAN -e shell
install App::lapidary

For more information on module installation, please visit the detailed CPAN module installation guide.

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