NAME
Bio::Tradis::Map - Perform mapping
VERSION
version 1.2
SYNOPSIS
Takes a reference genome and indexes it. Maps given fastq files to ref.
use Bio::Tradis::Map;
my $pipeline = Bio::Tradis::Map->new(fastqfile => 'abc', reference => 'abc');
$pipeline->index_ref();
$pipeline->do_mapping();PARAMETERS
Required
Optional
METHODS
For more information on the mapping and indexing options discussed here, see the SMALT manual
AUTHOR
Carla Cummins <cc21@sanger.ac.uk>
COPYRIGHT AND LICENSE
This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.
This is free software, licensed under:
The GNU General Public License, Version 3, June 20076 POD Errors
The following errors were encountered while parsing the POD:
- Around line 112:
=over should be: '=over' or '=over positive_number'
- Around line 117:
You forgot a '=back' before '=head2'
- Around line 119:
=over should be: '=over' or '=over positive_number'
- Around line 124:
You forgot a '=back' before '=head1'
- Around line 126:
=over should be: '=over' or '=over positive_number'
- Around line 144:
You forgot a '=back' before '=head1'