NAME
Bio::Polloc::Genome - A group of sequences from the same organism
AUTHOR - Luis M. Rodriguez-R
Email lmrodriguezr at gmail dot com
IMPLEMENTS OR EXTENDS
PUBLIC METHODS
Methods provided by the package
new
The basic initialization method
Arguments
- -name str
-
The name of the genome (from file if not provided).
- -file str
-
The file containing the (multi-)fasta with the genome.
file
Sets/gets the file containing the genome
get_sequences
Gets the collection of sequences.
Returns
An array of Bio::Seq objects.
search_sequence
Search a sequence by ID
Arguments
The id (str) of the sequence.
Returns
The sequence (Bio::Seq) or undef.
name
Gets/sets the name of the genome. If no name is set, tries to use the file instead.
INTERNAL METHODS
Methods intended to be used only within the scope of Bio::Polloc::*