/ 
Bio-Chado-Schema-0.08002
River stage one • 3 direct dependents • 3 total dependents
/ Bio::Chado::Schema::Result::Pub::Pub

NAME

Bio::Chado::Schema::Result::Pub::Pub

DESCRIPTION

A documented provenance artefact - publications, documents, personal communication.

NAME

Bio::Chado::Schema::Result::Pub::Pub

ACCESSORS

pub_id

data_type: 'integer'
is_auto_increment: 1
is_nullable: 0
sequence: 'pub_pub_id_seq'

title

data_type: 'text'
is_nullable: 1

Descriptive general heading.

volumetitle

data_type: 'text'
is_nullable: 1

Title of part if one of a series.

volume

data_type: 'varchar'
is_nullable: 1
size: 255

series_name

data_type: 'varchar'
is_nullable: 1
size: 255

Full name of (journal) series.

issue

data_type: 'varchar'
is_nullable: 1
size: 255

pyear

data_type: 'varchar'
is_nullable: 1
size: 255

pages

data_type: 'varchar'
is_nullable: 1
size: 255

Page number range[s], e.g. 457--459, viii + 664pp, lv--lvii.

miniref

data_type: 'varchar'
is_nullable: 1
size: 255

uniquename

data_type: 'text'
is_nullable: 0

type_id

data_type: 'integer'
is_foreign_key: 1
is_nullable: 0

The type of the publication (book, journal, poem, graffiti, etc). Uses pub cv.

is_obsolete

data_type: 'boolean'
default_value: false
is_nullable: 1

publisher

data_type: 'varchar'
is_nullable: 1
size: 255

pubplace

data_type: 'varchar'
is_nullable: 1
size: 255

RELATIONS

cell_line_cvterms

Type: has_many

Related object: Bio::Chado::Schema::Result::CellLine::CellLineCvterm

cell_line_features

Type: has_many

Related object: Bio::Chado::Schema::Result::CellLine::CellLineFeature

cell_line_libraries

Type: has_many

Related object: Bio::Chado::Schema::Result::CellLine::CellLineLibrary

cell_lineprop_pubs

Type: has_many

Related object: Bio::Chado::Schema::Result::CellLine::CellLinepropPub

cell_line_pubs

Type: has_many

Related object: Bio::Chado::Schema::Result::CellLine::CellLinePub

cell_line_synonyms

Type: has_many

Related object: Bio::Chado::Schema::Result::CellLine::CellLineSynonym

expression_pubs

Type: has_many

Related object: Bio::Chado::Schema::Result::Expression::ExpressionPub

feature_cvterms

Type: has_many

Related object: Bio::Chado::Schema::Result::Sequence::FeatureCvterm

feature_cvterm_pubs

Type: has_many

Related object: Bio::Chado::Schema::Result::Sequence::FeatureCvtermPub

feature_expressions

Type: has_many

Related object: Bio::Chado::Schema::Result::Expression::FeatureExpression

featureloc_pubs

Type: has_many

Related object: Bio::Chado::Schema::Result::Sequence::FeaturelocPub

featuremap_pubs

Type: has_many

Related object: Bio::Chado::Schema::Result::Map::FeaturemapPub

featureprop_pubs

Type: has_many

Related object: Bio::Chado::Schema::Result::Sequence::FeaturepropPub

feature_pubs

Type: has_many

Related object: Bio::Chado::Schema::Result::Sequence::FeaturePub

feature_relationshipprop_pubs

Type: has_many

Related object: Bio::Chado::Schema::Result::Sequence::FeatureRelationshippropPub

feature_relationship_pubs

Type: has_many

Related object: Bio::Chado::Schema::Result::Sequence::FeatureRelationshipPub

feature_synonyms

Type: has_many

Related object: Bio::Chado::Schema::Result::Sequence::FeatureSynonym

library_cvterms

Type: has_many

Related object: Bio::Chado::Schema::Result::Library::LibraryCvterm

libraryprop_pubs

Type: has_many

Related object: Bio::Chado::Schema::Result::Library::LibrarypropPub

library_pubs

Type: has_many

Related object: Bio::Chado::Schema::Result::Library::LibraryPub

library_synonyms

Type: has_many

Related object: Bio::Chado::Schema::Result::Library::LibrarySynonym

nd_experiment_pubs

Type: has_many

Related object: Bio::Chado::Schema::Result::NaturalDiversity::NdExperimentPub

phendescs

Type: has_many

Related object: Bio::Chado::Schema::Result::Genetic::Phendesc

phenotype_comparisons

Type: has_many

Related object: Bio::Chado::Schema::Result::Genetic::PhenotypeComparison

phenotype_comparison_cvterms

Type: has_many

Related object: Bio::Chado::Schema::Result::Genetic::PhenotypeComparisonCvterm

phenstatements

Type: has_many

Related object: Bio::Chado::Schema::Result::Genetic::Phenstatement

phylonode_pubs

Type: has_many

Related object: Bio::Chado::Schema::Result::Phylogeny::PhylonodePub

phylotree_pubs

Type: has_many

Related object: Bio::Chado::Schema::Result::Phylogeny::PhylotreePub

project_pubs

Type: has_many

Related object: Bio::Chado::Schema::Result::Project::ProjectPub

protocols

Type: has_many

Related object: Bio::Chado::Schema::Result::Mage::Protocol

type

Type: belongs_to

Related object: Bio::Chado::Schema::Result::Cv::Cvterm

pubauthors

Type: has_many

Related object: Bio::Chado::Schema::Result::Pub::Pubauthor

pub_dbxrefs

Type: has_many

Related object: Bio::Chado::Schema::Result::Pub::PubDbxref

pubprops

Type: has_many

Related object: Bio::Chado::Schema::Result::Pub::Pubprop

pub_relationship_objects

Type: has_many

Related object: Bio::Chado::Schema::Result::Pub::PubRelationship

pub_relationship_subjects

Type: has_many

Related object: Bio::Chado::Schema::Result::Pub::PubRelationship

stock_cvterms

Type: has_many

Related object: Bio::Chado::Schema::Result::Stock::StockCvterm

stockprop_pubs

Type: has_many

Related object: Bio::Chado::Schema::Result::Stock::StockpropPub

stock_pubs

Type: has_many

Related object: Bio::Chado::Schema::Result::Stock::StockPub

stock_relationship_cvterms

Type: has_many

Related object: Bio::Chado::Schema::Result::Stock::StockRelationshipCvterm

stock_relationship_pubs

Type: has_many

Related object: Bio::Chado::Schema::Result::Stock::StockRelationshipPub

studies

Type: has_many

Related object: Bio::Chado::Schema::Result::Mage::Study

create_pubprops

Usage: $set->create_pubprops({ baz => 2, foo => 'bar' });
Desc : convenience method to create pubprop properties using cvterms
        from the ontology with the given name
Args : hashref of { propname => value, ...},
       options hashref as:
        {
          autocreate => 0,
             (optional) boolean, if passed, automatically create cv,
             cvterm, and dbxref rows if one cannot be found for the
             given pubprop name.  Default false.

          cv_name => cv.name to use for the given pubprops.
                     Defaults to 'pub_property',

          db_name => db.name to use for autocreated dbxrefs,
                     default 'null',

          dbxref_accession_prefix => optional, default
                                     'autocreated:',
          definitions => optional hashref of:
              { cvterm_name => definition,
              }
           to load into the cvterm table when autocreating cvterms

           rank => force numeric rank. Be careful not to pass ranks that already exist
                   for the property type. The function will die in such case.

           allow_duplicate_values => default false.
              If true, allow duplicate instances of the same cvterm
              and value in the properties of the pubprop.  Duplicate
              values will have different ranks.
        }
Ret  : hashref of { propname => new pubprop object }

AUTHOR

Robert Buels <rbuels@cpan.org>

COPYRIGHT AND LICENSE

This software is copyright (c) 2011 by Robert Buels.

This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.