Revision history for Perl extension Bio::Homology::InterologWalk.
0.07 Tue Oct 05 14:50:26 2010
- rewrote _process_homologies() to get rid of "possible_ortholog"
paralogy class
- corrected extension bug in getDirectInteractions.pl
0.06 Sat Sep 18 19:50:26 2010
- introduced new method for computing conservation score for the
putative PPI: compute_conservation_score(). Status is experimental.
- rewritten doScores.pl to show usage of compute_conservation_score().
- rewritten Makefile.PL with new prerequisite checking scheme.
- rewritten interface to _build_query_options().
0.05 Thu Sep 09 18:50:26 2010
- do_attributes() now writes two attribute files: name attribute
and novel id attribute.
- Interface redesigned for do_networks() and do_attributes()
to simplify introduction of new node attribute file
- sample usage file doNets.pl rewritten to show usage of new interface
for the two methods
0.04 Fri Sep 03 01:09:26 2010
- removed version bug
- removed local library requirement in test script
0.03 Thu Sep 02 15:42:09 2010
- Relaxed Perl Version Requirement to 5.8.6
- fixed input namefile bug in getDirectInteractions.pl
- Removed DBI requirement (implicitly required by DBD::CSV)
- included MAC note in README
- changed arguments in compute_multiple_taxa_mean() in doScores.pl
- included "usage" conditions in doScores.pl and doNets.pl. No "default" filename anymore:
ensembl version in filename is dynamic, it would have broken soon.
0.02 Tue Aug 31 09:51:26 2010
- POD reformatted
0.01 Sun Aug 29 19:09:26 2010
- original version; created by h2xs 1.23 with options
-XA -n Bio::Homology::InterologWalk