Version 1.04
* Updated example BAM file (ex1.bam) to be compatible with 1.06 version
of samtools.
Version 1.03
* Fixed documentation on running with GBrowse.
* Fixed alignwrapper behavior so that GBrowse searches don't crash.
Version 1.02
* Fixed bug in parsing of unsigned integer tags that caused some tags to
be treated as signed integer.
Version 1.01
* Fixed Build.PL to pick up correct location of bam header files.
* Eliminated several memory leaks that manifested when reading BAM files
with lots of targets.
* Made -fasta argument optional when using high-level interface.
Version 1.00
* initial release
Tue Jun 23 23:47:28 BST 2009
* Many documentation improvements
* Improved performance of high-level interface for fetch() and pileup() functions.
* Added information to README about how to compile with samtools 0.1.4
Thu May 7 09:47:02 EDT 2009
* See t/01sam.t for a demonstration of the API.
* Essentially all of the API is fleshed out, with the exception of the ability to generate
padded alignment itself.
* The $alignment->query() interface is the one to use for retrieving start, end and sequence
of the query sequence. The $alignment->target() interface flips the meaning of start and
end when the alignment is reversed, to accomodate old AceDB/GFF2 scripts.