Revision history for Bio::Phylo
0.05 30/Sep/2005 20:53 Added sequence and alignment objects
Added lots more tree methods
Unified parsing and unparsing in a single
IO module
Newick parser now correctly
parses multiline strings
Implemented exceptions: Bio::Phylo::Exceptions
There is a discussion forum:
http://www.cpanforum.com/dist/Bio-Phylo
Autovivification of blessed hashes
now prevented by using 'fields'
Implemented a single iterator interface
for trees, tree objects, matrices, etc.
Implemented a separate treedrawer object
for SVG drawings
Updated and expanded the documentation
0.04 20/Aug/2005 18:45 Added clone method to duplicate objects
Added negative_to_zero method to remove
negative branch lengths.
0.03 09/Aug/2005 13:42 Added EXE_FILES switch to Makefile.pl, scripts
in bin dir are now installed in the right location.
Reorganized Node.pm: "QUERIES" are now grouped
under "ACCESSORS" (doesn't change API).
Added link to home page: http://www.sfu.ca/~rvosa/
Changed defaults for Svg unparser.
Changed parameter setting for unparsers.
0.02 02/Aug/2005 00:28 More example scripts in bin folder
Updated documentation for bug reports
Changed Newick parser (fewer method calls)
Minor bugfixes
0.01 30/Jul/2005 16:25 Initial CPAN release