Revision history for Bio-DOOP-DOOP
0.19 2007/05/10
Tha database have been changed, so the modules also changed. New
methods not added, but some old stuff have been removed.
0.18 2007/05/09
Modification in the Motif module. Correct the get_seqfeature_ids method
0.17 2007/04/24
Changes in the Sequence objects
0.16 2007/04/12
The Graphics::Feature module fixed, but Endre found some bug :-(
0.15 2007/04/12
The ClusterSubset class can manage the chordata database
0.14 2007/04/01
New module Util::Run::Fuzznuc.
New modification in Graphics::Feature, because it is not correct.
0.13 2007/03/28
The motifs in the Graphics::Feature module drawed incorrectly. Now fixed. Maybe
0.12 2007/03/19
The motifs in the Graphics::Feature module drawed correctly
The ClusterSubset module get_all_seqs method returns sorted sequences
0.11 2007/03/14
The motifs is the Graphics::Feature module drawed reverse order. Fixed
The first sequence in the graphics is a reference species
The UTR doesn't hide the species name
If no have motifs the Graphics::Feature module also create picture
0.10 2007/02/15
Add new object (Util::Run::Admin) to handle the running processes
0.09 2007/02/10
Add new methods to Cluster.pm (get_subset_by_type, get_availables_types)
Add new methods to Util::Run::Mofext object (run_background, get_results_from_file)
Now you can run mofext in the background.
0.08 2007/01/31
Add new method for Sequence.pm (get_raw_seq)
Fixed the motif drawing in Graphics::Feature module
Fixed the get_fasta method (add a new line to the end :-))
Add new method for SequenceFeature.pm (length)
Add new object (Util::Run::Mofext)
Fixed the get_subset_id methods in Bio::DOOP::Motif
Add more warning messages to the Cluster and ClusterSubset objects
0.07 2007/01/12
Add more comment for the documentation
Remove hungarian comments
0.06 2007/01/05
New method in Cluster class: get_ref_seq
Carp uses for module warnings
Some methods add warning messages if has an error in the MySQL database
0.05 2007/01/03
Search module recoding. The get_cluster_by_* methods
not give back redundant elements
0.04 2006/12/20
Bug fixes. New method in Cluster class: get_orig_subset.
0.03 2006/12/13
Advanced color handling in the Graphics::Feature module
Full access to the TSS annotation
0.02 2006/12/06
First version with correct CPAN install
0.01 2006/12/04
First version, released on an unsuspecting world.