Revision history for BioX-Seq
0.008008 2023-08-01
Fix bug where input format is not passed through to objects created
by range() and rev_com()
0.008007 2023-01-20
Use multi-argument form of piped opens, for security and to handle
filenames with spaces
0.008006 2022-05-26
Fix fatal error in Bio::Seq::Fetch where description is requested and
contains the greater-than sign
0.008005 2022-04-30
Add support for writing as input format
0.008004 2022-01-21
Add check for out-of-date faidx files
0.008003 2021-11-04
Added support for streaming xz-compressed files
0.008002 2021-04-08
Use core module IPC::Cmd instead of File::Which to look for installed
programs (removes last non-core dependency)
0.008001 2020-12-19
Bump minimum Perl version to 5.16 (older versions handle l-value
subroutines differently)
0.008 2019-07-17
Bio::Seq objects return true in boolean tests (even when the sequence
is empty)
0.007004 2019-01-11
Validate each FASTA sequence after parsing (can be turned off)
Much additional testing
0.007003 2019-01-11
Fix missing build dependency for Test::Exception
0.007002 2019-01-10
Write FASTA index files in raw mode for consistency on all platforms
Expanded test coverage
0.007001 2019-01-10
Skip advanced compression tests if binaries are missing
0.007 2018-12-28
Added support for streaming zstd-compressed files
0.006007 2018-06-19
Removed CPAN::Uploader as hard dependency
0.006006 2018-05-18
Misc documentation fixes
0.006005 2018-01-12
Fixed bug in ORF regex from Util module
0.006004 2017-11-05
Fixed memory leak caused by unnecessary binmode() and repeated
BioX::Seq::Stream::new()
0.006003 2017-07-04
Remove index file if failure during write
0.006 2017-04-21
Major documentation updates
Fixed bug in build_ORF_regex() causing problems after multiple calls
with different arguments
Increased coverage of testing suite
Increased coverage of POD
0.005 2017-04-20
Auto-indexing of FASTA files for BioX::Seq::Fetch
0.004 2016-11-18
Fixed handling of cross-platform line endings
0.001 2016-03-31
Initial release