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Annovar::Wrapper
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JILLROWE
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BioSAILs
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JILLROWE
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BioSAILs::Command
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JILLROWE
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BioSAILs::Command::add
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JILLROWE
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BioSAILs::Command::execute_array
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JILLROWE
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BioSAILs::Command::execute_job
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JILLROWE
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BioSAILs::Command::get_help
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JILLROWE
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BioSAILs::Command::new
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JILLROWE
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BioSAILs::Command::render
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JILLROWE
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BioSAILs::Command::submit_jobs
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JILLROWE
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BioSAILs::Command::version
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JILLROWE
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BioSAILs::Integrations::Github
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JILLROWE
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BioSAILs::Utils
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JILLROWE
|
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BioSAILs::Utils::CacheUtils
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JILLROWE
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BioSAILs::Utils::Files::CacheDir
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JILLROWE
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BioSAILs::Utils::LoadConfigs
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JILLROWE
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BioSAILs::Utils::Plugin
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JILLROWE
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BioSAILs::Utils::Traits
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JILLROWE
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BioX::Workflow
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JILLROWE
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BioX::Workflow::Command
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JILLROWE
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BioX::Workflow::Command::Exceptions
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JILLROWE
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BioX::Workflow::Command::Utils::Create
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JILLROWE
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BioX::Workflow::Command::Utils::Files
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JILLROWE
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BioX::Workflow::Command::Utils::Files::TrackChanges
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JILLROWE
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BioX::Workflow::Command::Utils::Log
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JILLROWE
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BioX::Workflow::Command::Utils::Plugin
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JILLROWE
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BioX::Workflow::Command::Utils::Traits
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JILLROWE
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BioX::Workflow::Command::add
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JILLROWE
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BioX::Workflow::Command::file_log
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JILLROWE
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BioX::Workflow::Command::inspect
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JILLROWE
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BioX::Workflow::Command::inspect::Exceptions::Path
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JILLROWE
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BioX::Workflow::Command::inspect::Utils::ParsePlainText
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JILLROWE
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BioX::Workflow::Command::new
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JILLROWE
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BioX::Workflow::Command::run
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JILLROWE
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BioX::Workflow::Command::run::Rules::Directives
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JILLROWE
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BioX::Workflow::Command::run::Rules::Directives::Exceptions::DidNotDeclare
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JILLROWE
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BioX::Workflow::Command::run::Rules::Directives::Exceptions::SyntaxError
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JILLROWE
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BioX::Workflow::Command::run::Rules::Directives::Functions
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JILLROWE
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BioX::Workflow::Command::run::Rules::Directives::Inspect
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JILLROWE
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BioX::Workflow::Command::run::Rules::Directives::Interpolate
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JILLROWE
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BioX::Workflow::Command::run::Rules::Directives::Interpolate::Jinja
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JILLROWE
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BioX::Workflow::Command::run::Rules::Directives::Interpolate::Mustache
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JILLROWE
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BioX::Workflow::Command::run::Rules::Directives::Interpolate::Text
|
JILLROWE
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BioX::Workflow::Command::run::Rules::Directives::Sample
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JILLROWE
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BioX::Workflow::Command::run::Rules::Directives::Types::Array
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JILLROWE
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BioX::Workflow::Command::run::Rules::Directives::Types::CSV
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JILLROWE
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BioX::Workflow::Command::run::Rules::Directives::Types::Config
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JILLROWE
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BioX::Workflow::Command::run::Rules::Directives::Types::Glob
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JILLROWE
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BioX::Workflow::Command::run::Rules::Directives::Types::HPC
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JILLROWE
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BioX::Workflow::Command::run::Rules::Directives::Types::Hash
|
JILLROWE
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BioX::Workflow::Command::run::Rules::Directives::Types::List
|
JILLROWE
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BioX::Workflow::Command::run::Rules::Directives::Types::Mustache
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JILLROWE
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BioX::Workflow::Command::run::Rules::Directives::Types::Path
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JILLROWE
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BioX::Workflow::Command::run::Rules::Directives::Types::Roles::File
|
JILLROWE
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BioX::Workflow::Command::run::Rules::Directives::Types::Stash
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JILLROWE
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BioX::Workflow::Command::run::Rules::Directives::Walk
|
JILLROWE
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BioX::Workflow::Command::run::Rules::Exceptions::KeyDeclaration
|
JILLROWE
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BioX::Workflow::Command::run::Rules::Exceptions::OneRuleName
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JILLROWE
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BioX::Workflow::Command::run::Rules::Rules
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JILLROWE
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BioX::Workflow::Command::run::Utils::Attributes
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JILLROWE
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BioX::Workflow::Command::run::Utils::Debug
|
JILLROWE
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BioX::Workflow::Command::run::Utils::Directives
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JILLROWE
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BioX::Workflow::Command::run::Utils::Files::ResolveDeps
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JILLROWE
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BioX::Workflow::Command::run::Utils::Files::TrackChanges
|
JILLROWE
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BioX::Workflow::Command::run::Utils::Rules
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JILLROWE
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BioX::Workflow::Command::run::Utils::Samples
|
JILLROWE
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BioX::Workflow::Command::run::Utils::WriteMeta
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JILLROWE
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BioX::Workflow::Command::stats
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JILLROWE
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BioX::Workflow::Command::validate
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JILLROWE
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BioX::Workflow::Debug
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JILLROWE
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BioX::Workflow::Drake
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JILLROWE
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BioX::Workflow::Plugin::Drake
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JILLROWE
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BioX::Workflow::Plugin::ENV
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JILLROWE
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BioX::Workflow::Plugin::FileDetails
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JILLROWE
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BioX::Workflow::Plugin::FileExists
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JILLROWE
|
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BioX::Workflow::Rules
|
JILLROWE
|
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BioX::Workflow::Samples
|
JILLROWE
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BioX::Workflow::SpecialVars
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JILLROWE
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BioX::Workflow::StructureOutput
|
JILLROWE
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BioX::Workflow::WriteMeta
|
JILLROWE
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BioX::Wrapper
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JILLROWE
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BioX::Wrapper::Annovar
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JILLROWE
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|
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BioX::Wrapper::Gemini
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JILLROWE
|
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HPC::Runner
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JILLROWE
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HPC::Runner::Command
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JILLROWE
|
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HPC::Runner::Command::Logger::JSON
|
JILLROWE
|
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HPC::Runner::Command::Logger::JSON::Archive
|
JILLROWE
|
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HPC::Runner::Command::Logger::Loggers
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JILLROWE
|
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HPC::Runner::Command::Plugin::ConfigHome
|
JILLROWE
|
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HPC::Runner::Command::Plugin::ConfigHome::Meta::Class
|
JILLROWE
|
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HPC::Runner::Command::Plugin::Configs
|
JILLROWE
|
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HPC::Runner::Command::Plugin::Logger::Sqlite
|
JILLROWE
|
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HPC::Runner::Command::Plugin::Logger::Sqlite::Deploy
|
JILLROWE
|
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HPC::Runner::Command::Plugin::Logger::Sqlite::Schema
|
JILLROWE
|
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HPC::Runner::Command::Plugin::Logger::Sqlite::Schema::Result::Job
|
JILLROWE
|
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HPC::Runner::Command::Plugin::Logger::Sqlite::Schema::Result::Submission
|
JILLROWE
|
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HPC::Runner::Command::Plugin::Logger::Sqlite::Schema::Result::Task
|
JILLROWE
|
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HPC::Runner::Command::Utils::Base
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JILLROWE
|
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HPC::Runner::Command::Utils::Git
|
JILLROWE
|
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HPC::Runner::Command::Utils::Log
|
JILLROWE
|
|
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HPC::Runner::Command::Utils::ManyConfigs
|
JILLROWE
|
|
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HPC::Runner::Command::Utils::Plugin
|
JILLROWE
|
|
|
HPC::Runner::Command::Utils::Traits
|
JILLROWE
|
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HPC::Runner::Command::archive
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JILLROWE
|
|
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HPC::Runner::Command::draw_deps
|
JILLROWE
|
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HPC::Runner::Command::execute_array
|
JILLROWE
|
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HPC::Runner::Command::execute_array::Plugin::Logger::Sqlite
|
JILLROWE
|
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|
HPC::Runner::Command::execute_job
|
JILLROWE
|
|
|
HPC::Runner::Command::execute_job::Base
|
JILLROWE
|
|
|
HPC::Runner::Command::execute_job::Logger::JSON
|
JILLROWE
|
|
|
HPC::Runner::Command::execute_job::Logger::Lock
|
JILLROWE
|
|
|
HPC::Runner::Command::execute_job::Plugin::Logger::Sqlite
|
JILLROWE
|
|
|
HPC::Runner::Command::execute_job::Utils::Log
|
JILLROWE
|
|
|
HPC::Runner::Command::execute_job::Utils::MCE
|
JILLROWE
|
|
|
HPC::Runner::Command::execute_job::Utils::MemProfile
|
JILLROWE
|
|
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HPC::Runner::Command::execute_job::Utils::Plugin
|
JILLROWE
|
|
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HPC::Runner::Command::new
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JILLROWE
|
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HPC::Runner::Command::single_node
|
JILLROWE
|
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HPC::Runner::Command::stats
|
JILLROWE
|
|
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HPC::Runner::Command::stats::Logger::JSON::JSONOutput
|
JILLROWE
|
|
|
HPC::Runner::Command::stats::Logger::JSON::Long
|
JILLROWE
|
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HPC::Runner::Command::stats::Logger::JSON::Long::JSONOutput
|
JILLROWE
|
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|
HPC::Runner::Command::stats::Logger::JSON::Long::TableOutput
|
JILLROWE
|
|
|
HPC::Runner::Command::stats::Logger::JSON::Summary
|
JILLROWE
|
|
|
HPC::Runner::Command::stats::Logger::JSON::Summary::JSONOutput
|
JILLROWE
|
|
|
HPC::Runner::Command::stats::Logger::JSON::Summary::TableOutput
|
JILLROWE
|
|
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HPC::Runner::Command::stats::Logger::JSON::TableOutput
|
JILLROWE
|
|
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HPC::Runner::Command::stats::Logger::JSON::Utils
|
JILLROWE
|
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HPC::Runner::Command::submit_jobs
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JILLROWE
|
|
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HPC::Runner::Command::submit_jobs::Logger::JSON
|
JILLROWE
|
|
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HPC::Runner::Command::submit_jobs::Plugin::Dummy
|
JILLROWE
|
|
|
HPC::Runner::Command::submit_jobs::Plugin::Logger::Sqlite
|
JILLROWE
|
|
|
HPC::Runner::Command::submit_jobs::Plugin::PBS
|
JILLROWE
|
|
|
HPC::Runner::Command::submit_jobs::Plugin::Role::Log
|
JILLROWE
|
|
|
HPC::Runner::Command::submit_jobs::Plugin::SGE
|
JILLROWE
|
|
|
HPC::Runner::Command::submit_jobs::Plugin::Slurm
|
JILLROWE
|
|
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HPC::Runner::Command::submit_jobs::Utils::Log
|
JILLROWE
|
|
|
HPC::Runner::Command::submit_jobs::Utils::Plugin
|
JILLROWE
|
|
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HPC::Runner::Command::submit_jobs::Utils::Scheduler
|
JILLROWE
|
|
|
HPC::Runner::Command::submit_jobs::Utils::Scheduler::Batch
|
JILLROWE
|
|
|
HPC::Runner::Command::submit_jobs::Utils::Scheduler::Directives
|
JILLROWE
|
|
|
HPC::Runner::Command::submit_jobs::Utils::Scheduler::Files
|
JILLROWE
|
|
|
HPC::Runner::Command::submit_jobs::Utils::Scheduler::Job
|
JILLROWE
|
|
|
HPC::Runner::Command::submit_jobs::Utils::Scheduler::JobDeps
|
JILLROWE
|
|
|
HPC::Runner::Command::submit_jobs::Utils::Scheduler::JobStats
|
JILLROWE
|
|
|
HPC::Runner::Command::submit_jobs::Utils::Scheduler::ParseInput
|
JILLROWE
|
|
|
HPC::Runner::Command::submit_jobs::Utils::Scheduler::ResolveDeps
|
JILLROWE
|
|
|
HPC::Runner::Command::submit_jobs::Utils::Scheduler::ResolveDeps::AssignTaskDeps
|
JILLROWE
|
|
|
HPC::Runner::Command::submit_jobs::Utils::Scheduler::ResolveDeps::BuildTaskDeps
|
JILLROWE
|
|
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HPC::Runner::Command::submit_jobs::Utils::Scheduler::Submit
|
JILLROWE
|
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|
HPC::Runner::Command::submit_jobs::Utils::Scheduler::UseArrays
|
JILLROWE
|
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|
HPC::Runner::Command::submit_jobs::Utils::Scheduler::UseBatches
|
JILLROWE
|
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HPC::Runner::Command::watch_db
|
JILLROWE
|
|
|
HPC::Runner::GnuParallel
|
JILLROWE
|
|
|
HPC::Runner::MCE
|
JILLROWE
|
|
|
HPC::Runner::Node
|
JILLROWE
|
|
|
HPC::Runner::PBS
|
JILLROWE
|
|
|
HPC::Runner::Scheduler
|
JILLROWE
|
|
|
HPC::Runner::Slurm
|
JILLROWE
|
|
|
HPC::Runner::Threads
|
JILLROWE
|
|
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Runner::Init
|
JILLROWE
|
|
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Runner::MCE
|
JILLROWE
|
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Runner::Slurm
|
JILLROWE
|
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Runner::Threads
|
JILLROWE
|
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