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CLIPSeqTools
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MNSMAR
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CLIPSeqTools::App
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MNSMAR
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CLIPSeqTools::App::all
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MNSMAR
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CLIPSeqTools::App::cluster_size_and_score_distribution
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MNSMAR
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CLIPSeqTools::App::conservation_distribution
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MNSMAR
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CLIPSeqTools::App::count_reads_on_genic_elements
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MNSMAR
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CLIPSeqTools::App::distribution_on_genic_elements
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MNSMAR
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CLIPSeqTools::App::distribution_on_introns_exons
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MNSMAR
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CLIPSeqTools::App::export_bed
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MNSMAR
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CLIPSeqTools::App::genome_coverage
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MNSMAR
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CLIPSeqTools::App::genomic_distribution
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MNSMAR
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CLIPSeqTools::App::nmer_enrichment_over_shuffled
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MNSMAR
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CLIPSeqTools::App::nucleotide_composition
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MNSMAR
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CLIPSeqTools::App::reads_long_gaps_size_distribution
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MNSMAR
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CLIPSeqTools::App::size_distribution
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MNSMAR
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CLIPSeqTools::CompareApp
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MNSMAR
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CLIPSeqTools::CompareApp::all
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MNSMAR
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CLIPSeqTools::CompareApp::compare_counts
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MNSMAR
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CLIPSeqTools::CompareApp::join_tables
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MNSMAR
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CLIPSeqTools::CompareApp::libraries_overlap_stats
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MNSMAR
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CLIPSeqTools::CompareApp::libraries_relative_read_density
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MNSMAR
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CLIPSeqTools::PlotApp
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MNSMAR
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CLIPSeqTools::PlotApp::cluster_size_and_score_distribution
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MNSMAR
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CLIPSeqTools::PlotApp::conservation_distribution
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MNSMAR
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CLIPSeqTools::PlotApp::distribution_on_genic_elements
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MNSMAR
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CLIPSeqTools::PlotApp::distribution_on_introns_exons
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MNSMAR
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CLIPSeqTools::PlotApp::genomic_distribution
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MNSMAR
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CLIPSeqTools::PlotApp::libraries_relative_read_density
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MNSMAR
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CLIPSeqTools::PlotApp::nucleotide_composition
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MNSMAR
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CLIPSeqTools::PlotApp::reads_long_gaps_size_distribution
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MNSMAR
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CLIPSeqTools::PlotApp::scatterplot
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MNSMAR
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CLIPSeqTools::PlotApp::size_distribution
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MNSMAR
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CLIPSeqTools::PreprocessApp
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MNSMAR
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CLIPSeqTools::PreprocessApp::all
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MNSMAR
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CLIPSeqTools::PreprocessApp::annotate_with_conservation
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MNSMAR
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CLIPSeqTools::PreprocessApp::annotate_with_deletions
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MNSMAR
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CLIPSeqTools::PreprocessApp::annotate_with_file
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MNSMAR
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CLIPSeqTools::PreprocessApp::annotate_with_genic_elements
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MNSMAR
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CLIPSeqTools::PreprocessApp::cleanup_alignment
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MNSMAR
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CLIPSeqTools::PreprocessApp::collapse_fastq
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MNSMAR
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CLIPSeqTools::PreprocessApp::cut_adaptor
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MNSMAR
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CLIPSeqTools::PreprocessApp::sam_to_sqlite
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MNSMAR
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CLIPSeqTools::PreprocessApp::star_alignment
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MNSMAR
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CLIPSeqTools::PreprocessApp::trim_fastq
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MNSMAR
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CLIPSeqTools::Role::Option::Genes
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MNSMAR
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CLIPSeqTools::Role::Option::Library
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MNSMAR
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CLIPSeqTools::Role::Option::OutputPrefix
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MNSMAR
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CLIPSeqTools::Role::Option::Plot
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MNSMAR
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CLIPSeqTools::Role::Option::ReferenceLibrary
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MNSMAR
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CLIPSeqTools::Role::Option::Transcripts
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MNSMAR
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GenOO
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MNSMAR
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GenOO::Data::DB::Connector
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MNSMAR
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GenOO::Data::DB::DBIC::Species::Schema
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MNSMAR
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GenOO::Data::DB::DBIC::Species::Schema::Result::Draft
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MNSMAR
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GenOO::Data::DB::DBIC::Species::Schema::SampleResultBase::v1
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MNSMAR
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GenOO::Data::DB::DBIC::Species::Schema::SampleResultBase::v2
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MNSMAR
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GenOO::Data::DB::DBIC::Species::Schema::SampleResultBase::v3
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MNSMAR
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GenOO::Data::File::BED
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MNSMAR
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GenOO::Data::File::BED::Record
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MNSMAR
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GenOO::Data::File::FASTA
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MNSMAR
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GenOO::Data::File::FASTA::Record
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MNSMAR
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GenOO::Data::File::FASTQ
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MNSMAR
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GenOO::Data::File::FASTQ::Record
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MNSMAR
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GenOO::Data::File::GFF
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MNSMAR
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GenOO::Data::File::GFF::Record
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MNSMAR
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GenOO::Data::File::SAM
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MNSMAR
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GenOO::Data::File::SAM::Cigar
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MNSMAR
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GenOO::Data::File::SAM::CigarAndMDZ
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MNSMAR
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GenOO::Data::File::SAM::MDZ
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MNSMAR
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GenOO::Data::File::SAM::Record
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MNSMAR
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GenOO::Data::Structure::DoubleHashArray
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MNSMAR
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GenOO::Exon
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MNSMAR
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GenOO::Gene
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MNSMAR
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GenOO::GeneCollection::Factory
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MNSMAR
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GenOO::GeneCollection::Factory::FromTranscriptCollection
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MNSMAR
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GenOO::GeneCollection::Factory::GTF
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MNSMAR
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GenOO::GenomicRegion
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MNSMAR
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GenOO::Helper::MyMath
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MNSMAR
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GenOO::Intron
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MNSMAR
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GenOO::Junction
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MNSMAR
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GenOO::Module::Search::Binary
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MNSMAR
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GenOO::Region
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MNSMAR
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GenOO::RegionCollection
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MNSMAR
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GenOO::RegionCollection::Factory
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MNSMAR
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GenOO::RegionCollection::Factory::BED
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MNSMAR
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GenOO::RegionCollection::Factory::DBIC
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MNSMAR
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GenOO::RegionCollection::Factory::RegionArray
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MNSMAR
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GenOO::RegionCollection::Factory::Requires
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MNSMAR
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GenOO::RegionCollection::Factory::SAM
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MNSMAR
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GenOO::RegionCollection::Type::DBIC
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MNSMAR
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GenOO::RegionCollection::Type::DoubleHashArray
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MNSMAR
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GenOO::Spliceable
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MNSMAR
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GenOO::Transcript
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MNSMAR
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GenOO::Transcript::CDS
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MNSMAR
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GenOO::Transcript::Part
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MNSMAR
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GenOO::Transcript::UTR3
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MNSMAR
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GenOO::Transcript::UTR5
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MNSMAR
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GenOO::TranscriptCollection
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MNSMAR
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GenOO::TranscriptCollection::Factory
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MNSMAR
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GenOO::TranscriptCollection::Factory::FromGeneCollection
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MNSMAR
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GenOO::TranscriptCollection::Factory::GTF
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MNSMAR
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GenOOx::Data::File::SAMbwa
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MNSMAR
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GenOOx::Data::File::SAMbwa::Record
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MNSMAR
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GenOOx::Data::File::SAMstar
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MNSMAR
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GenOOx::Data::File::SAMstar::Record
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MNSMAR
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