NAME
siemphysdat - chop Siemens Physiologic Monitoring Unit (PMU) physio files to MR timing for AFNI's retroTS
SYNOPSIS
siemphysdat [options] phsyiofile1 physiofile2 MRdir/
Options:
-d 0, # number of MR volumes to discard
#before start
-s [alt+z],alt-z,seq+z, # slice order
seq-z,filename
-o prefix # where to save files,
# trailing slash are important
-r [matlab]|McRetroTs| # retoTS method
show | none
-j [none], bids_file.json # use bids json file as input
# INSTEAD of MRdir/
-n [none], # # specify number of trs. neccessary if using -j
-t [none],MR,Phys,all # trust times&samplerate
# dont compare to index count
-r none
is useful if you only want the *dat files
-t MR
is useful for testing against data/
-t Phys
is useful for forcing a sampling rate
OUTPUT
*dat
-
chopped volrage meassurements with triggers removed,
*slibase.1D
-
RVT from AFNI's RetroTS ready for
afni_proc.py
or3dretroicor
DESCRIPTION

siemphysdat will chop two physio files given timing of DICOMS in MRdir and save in a format RetroTS.m likes.
SEE ALSO
App::AFNI::SiemensPhysio