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Bio-Das-1.17
River stage zero No dependents

Changes for version 1.17 - 2010-06-29

  • Improved stylesheet generation: fixed a bug involving memoization of the glyph() routine that was returning the wrong glyph in some circumstances.

Modules

Bio::Das
Interface to Distributed Annotation System
Bio::Das::DSN
Object encapsulation of a DAS data source
Bio::Das::Feature
A genomic annotation
Bio::Das::FeatureIterator
Iterate over a set of Bio::Das::Features
Bio::Das::HTTP::Fetch
Manage the HTTP protocol for DAS transactions
Bio::Das::Map
Resolve map coordinates
Bio::Das::Request
Base class for a request on a DAS server
Bio::Das::Request::Dnas
The DAS "dna" request
Bio::Das::Request::Dsn
The DAS "dsn" request
Bio::Das::Request::Entry_points
The DAS "entry_points" request
Bio::Das::Request::Feature2Segments
Translate feature names into segments
Bio::Das::Request::Sequences
The DAS "sequence" request
Bio::Das::Request::Stylesheet
The DAS "stylesheet" request
Bio::Das::Request::Types
The DAS "types" request
Bio::Das::Segment
Serial access to Bio::Das sequence "segments"
Bio::Das::Stylesheet
Access to DAS stylesheets
Bio::Das::Type
A sequence annotation type
Bio::Das::TypeHandler
Utilities for handling types
Bio::Das::Util
Das Utilities

Provides

Bio::Das::AGPServer::Config
in Das/AGPServer/Config.pm
Bio::Das::AGPServer::Daemon
in Das/AGPServer/Daemon.pm
Bio::Das::AGPServer::Parser
in Das/AGPServer/Parser.pm
Bio::Das::AGPServer::SQLStorage
in Das/AGPServer/SQLStorage.pm
Bio::Das::AGPServer::SQLStorage::CSV::DB
in Das/AGPServer/SQLStorage/CSV/DB.pm
Bio::Das::AGPServer::SQLStorage::MySQL::DB
in Das/AGPServer/SQLStorage/MySQL/DB.pm
Bio::Das::Request::Features
in Das/Request/Features.pm

Examples

Other files