all_entities_ModelCompartment
Return all instances of the ModelCompartment entity.
The Model Compartment represents a section of a cell (e.g. cell wall, cytoplasm) as it appears in a specific model.
Example:
all_entities_ModelCompartment -a would retrieve all entities of type ModelCompartment and include all fields in the entities in the output.
Related entities
The ModelCompartment entity has the following relationship links:
Command-Line Options
- -a
-
Return all fields.
- -h
-
Display a list of the fields available for use.
- -fields field-list
-
Choose a set of fields to return. Field-list is a comma-separated list of strings. The following fields are available:
- compartment_index
- label
- pH
- potential
Output Format
The standard output is a tab-delimited file. It consists of the input file with an extra column added for each requested field. Input lines that cannot be extended are written to stderr.