all_entities_PairSet
Return all instances of the PairSet entity.
A PairSet is a precompute set of pairs or genes. Each pair occurs close to one another of the chromosome. We believe that all of the first members of the pairs correspond to one another (are quite similar), as do all of the second members of the pairs. These pairs (from prokaryotic genomes) offer on of the most powerful clues relating to uncharacterized genes/peroteins.
Example:
all_entities_PairSet -a would retrieve all entities of type PairSet and include all fields in the entities in the output.
Related entities
The PairSet entity has the following relationship links:
Command-Line Options
- -a
-
Return all fields.
- -h
-
Display a list of the fields available for use.
- -fields field-list
-
Choose a set of fields to return. Field-list is a comma-separated list of strings. The following fields are available:
- score
Output Format
The standard output is a tab-delimited file. It consists of the input file with an extra column added for each requested field. Input lines that cannot be extended are written to stderr.