/ 
Bio-MAGETAB-1.31
River stage zero No dependents

Changes for version 1.31

  • with DateTime::Format::Flexible, which appears to be maintained more responsively.

Modules

Bio::MAGETAB
A data model and utility API for the MAGE-TAB format.
Bio::MAGETAB::ArrayDesign
MAGE-TAB array design class
Bio::MAGETAB::Assay
MAGE-TAB assay class
Bio::MAGETAB::BaseClass
Abstract base class for all MAGE-TAB classes.
Bio::MAGETAB::Comment
MAGE-TAB user-defined comment class
Bio::MAGETAB::CompositeElement
MAGE-TAB composite element class
Bio::MAGETAB::Contact
MAGE-TAB contact class
Bio::MAGETAB::ControlledTerm
MAGE-TAB controlled term class
Bio::MAGETAB::Data
Abstract data class
Bio::MAGETAB::DataAcquisition
MAGE-TAB data acquisition class
Bio::MAGETAB::DataFile
MAGE-TAB data file class
Bio::MAGETAB::DataMatrix
MAGE-TAB data matrix class
Bio::MAGETAB::DatabaseEntry
MAGE-TAB database entry class
Bio::MAGETAB::DesignElement
Abstract design element class
Bio::MAGETAB::Edge
MAGE-TAB edge class
Bio::MAGETAB::Event
Abstract event class
Bio::MAGETAB::Extract
MAGE-TAB extract class
Bio::MAGETAB::Factor
MAGE-TAB experimental factor class
Bio::MAGETAB::FactorValue
MAGE-TAB experimental factor class
Bio::MAGETAB::Feature
MAGE-TAB feature class
Bio::MAGETAB::Investigation
MAGE-TAB investigation class
Bio::MAGETAB::LabeledExtract
MAGE-TAB labeled extract class
Bio::MAGETAB::Material
Abstract material class
Bio::MAGETAB::MatrixColumn
MAGE-TAB matrix column class
Bio::MAGETAB::MatrixRow
MAGE-TAB matrix row class
Bio::MAGETAB::Measurement
MAGE-TAB measurement class
Bio::MAGETAB::Node
Abstract node class
Bio::MAGETAB::Normalization
MAGE-TAB data acquisition class
Bio::MAGETAB::ParameterValue
MAGE-TAB parameter value class
Bio::MAGETAB::Protocol
MAGE-TAB protocol class
Bio::MAGETAB::ProtocolApplication
MAGE-TAB protocol application class
Bio::MAGETAB::ProtocolParameter
MAGE-TAB protocol parameter class
Bio::MAGETAB::Publication
MAGE-TAB publication class
Bio::MAGETAB::Reporter
MAGE-TAB reporter class
Bio::MAGETAB::SDRF
MAGE-TAB SDRF class
Bio::MAGETAB::SDRFRow
MAGE-TAB SDRF row class
Bio::MAGETAB::Sample
MAGE-TAB sample class
Bio::MAGETAB::Source
MAGE-TAB source class
Bio::MAGETAB::TermSource
MAGE-TAB term source class
Bio::MAGETAB::Types
custom data types for Bio::MAGETAB
Bio::MAGETAB::Util::Builder
A storage class used to track Bio::MAGETAB object creation.
Bio::MAGETAB::Util::DBLoader
A persistent storage class used to track Bio::MAGETAB object creation and insertion into a relational database.
Bio::MAGETAB::Util::Persistence
A Tangram-based object persistence class for MAGE-TAB.
Bio::MAGETAB::Util::Reader
A parser/validator for MAGE-TAB documents.
Bio::MAGETAB::Util::Reader::ADF
ADF parser class.
Bio::MAGETAB::Util::Reader::DataMatrix
Data matrix parser class.
Bio::MAGETAB::Util::Reader::IDF
IDF parser class.
Bio::MAGETAB::Util::Reader::SDRF
SDRF parser class.
Bio::MAGETAB::Util::Reader::Tabfile
An abstract class providing methods for handling tab-delimited files.
Bio::MAGETAB::Util::Reader::TagValueFile
An abstract class providing methods for handling tab-delimited files.
Bio::MAGETAB::Util::RewriteAE
A utility class providing methods to correct some common errors in ArrayExpress MAGE-TAB documents.
Bio::MAGETAB::Util::Writer
Export of MAGE-TAB objects.
Bio::MAGETAB::Util::Writer::ADF
Export of MAGE-TAB ArrayDesign objects.
Bio::MAGETAB::Util::Writer::GraphViz
Visualization of MAGE-TAB objects.
Bio::MAGETAB::Util::Writer::IDF
Export of MAGE-TAB Investigation objects.
Bio::MAGETAB::Util::Writer::SDRF
Export of MAGE-TAB SDRF objects.
Bio::MAGETAB::Util::Writer::Tabfile
Abstract MAGE-TAB exporter class.

Other files