NAME
extract-mcl-out.pl - Extract orthogroups (FASTA files) from MCL clusters
VERSION
version 0.210170
USAGE
extract-mcl-out.pl <infiles> --database=<file> [optional arguments]
REQUIRED ARGUMENTS
- <infiles>
-
Path to input group definition files [repeatable argument]. Input file format follows OrthoMCL <groups.txt> (or OrthoFinder <OrthologousGroups.txt>) format. Each file will be turned into a new subdirectory populated with FASTA files corresponding to all the group definition of the input file.
- --database=<file>
-
Path to the FASTA file containing the sequence database.
OPTIONAL ARGUMENTS
AUTHOR
Denis BAURAIN <denis.baurain@uliege.be>
COPYRIGHT AND LICENSE
This software is copyright (c) 2021 by University of Liege / Unit of Eukaryotic Phylogenomics / Denis BAURAIN.
This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.