Distributions Which Depend on BioPerl
River gauge Release Uploaded
River stage zero No dependents Bio-ToolBox-2.041 Tools for querying and analysis of genomic data 25 Oct 2025 18:22:00 UTC
River stage zero No dependents Bio-EnsEMBL-113.0.0 Bio::EnsEMBL - Ensembl Core API 18 Oct 2024 09:59:43 UTC
River stage zero No dependents Bio-DB-SeqFeature-1.7.5 Normalized feature for use with Bio::DB::SeqFeature::Store 27 Sep 2024 22:01:53 UTC
River stage zero No dependents Bio-BPWrapper-1.15 wrappers of popular BioPerl classes (`Bio::SeqIO`, `Bio::Seq`, `Bio::AlignIO`, `Bio::SimpleAlign 27 Feb 2024 16:55:31 UTC
River stage one • 2 direct dependents • 9 total dependents Bio-DB-NCBIHelper-1.7.8 A collection of routines useful for queries to NCBI databases. 15 Dec 2023 04:25:18 UTC
River stage zero No dependents Mashtree-1.4.6 functions for Mashtree databasing 03 Nov 2023 14:03:17 UTC
River stage zero No dependents Bio-DB-USeq-0.26 Read USeq archive database files 24 Sep 2022 02:31:45 UTC
River stage zero No dependents Bio-GeneDesign-5.56 Functions for the design of synthetic genes 19 Jun 2020 16:50:54 UTC
River stage zero No dependents Bio-EUtilities-1.77 BioPerl low-level API for retrieving and storing data from NCBI eUtils 09 Mar 2020 18:59:57 UTC
River stage zero No dependents Bio-DB-Taxonomy-sqlite-1.7.3 SQLite-based implementation of Bio::DB::Taxonomy::flatfile 02 Mar 2020 05:53:54 UTC
River stage one • 2 direct dependents • 2 total dependents Bio-DB-GFF-1.7.4 Storage and retrieval of sequence annotation data 08 Jan 2020 20:41:58 UTC
River stage two • 1 direct dependent • 13 total dependents Bio-Variation-1.7.5 BioPerl variation-related functionality 06 Jan 2020 19:59:16 UTC
River stage one • 2 direct dependents • 9 total dependents Bio-DB-RefSeq-1.7.4 Database object interface for RefSeq retrieval 07 Dec 2019 22:10:26 UTC
River stage one • 1 direct dependent • 8 total dependents Bio-DB-SwissProt-1.7.4 Database object interface to SwissProt retrieval 07 Dec 2019 22:09:00 UTC
River stage zero No dependents Bio-Tradis-1.4.5 Bio-Tradis contains a set of tools to analyse the output from TraDIS analyses. For more information on the TraDIS method, see http://genome.cshlp.org/content/19/12/2308 04 Dec 2019 14:41:26 UTC
River stage one • 6 direct dependents • 7 total dependents Bio-Procedural-1.7.4 Simple low-dependency procedural interfaces to BioPerl 29 Nov 2019 20:57:49 UTC
River stage zero No dependents Bio-Roary-3.13.0 Create a pan genome 06 Nov 2019 21:32:21 UTC
River stage zero No dependents Bio-RNA-RNAaliSplit-v0.11 Split and deconvolute structural RNA multiple sequence alignments 26 Aug 2019 21:13:29 UTC
River stage one • 1 direct dependent • 1 total dependent Bio-DB-HTS-3.01 Perl interface to HTS library for DNA sequencing 23 Apr 2019 13:51:11 UTC
River stage one • 1 direct dependent • 8 total dependents Bio-DB-EMBL-1.7.4 Database object interface for EMBL entry retrieval 04 Mar 2019 05:02:40 UTC
River stage one • 2 direct dependents • 2 total dependents BioPerl-Run-1.007003 BioPerl-Run - wrapper toolkit 08 Feb 2019 19:55:33 UTC
River stage zero No dependents Bio-ViennaNGS-v0.19.2 A Perl distribution for Next-Generation Sequencing (NGS) data analysis 11 Dec 2018 13:25:00 UTC
River stage zero No dependents Bio-AutomatedAnnotation-1.182770 Automated annotation of assemblies 04 Oct 2018 13:47:56 UTC
River stage two • 1 direct dependent • 12 total dependents Bio-Cluster-1.7.3 BioPerl cluster modules 01 Oct 2018 04:35:53 UTC
River stage one • 1 direct dependent • 8 total dependents Bio-Tools-Run-RemoteBlast-1.7.3 Object for remote execution of the NCBI Blast via HTTP 25 Sep 2018 04:48:13 UTC
River stage two • 2 direct dependents • 11 total dependents Bio-ASN1-EntrezGene-1.73 Regular expression-based Perl Parser for NCBI Entrez Gene. 25 Sep 2018 02:32:11 UTC
River stage zero No dependents Bio-Tools-Gel-1.7.3 Calculates relative electrophoretic migration distances 25 Sep 2018 01:48:58 UTC
River stage zero No dependents Bio-PhyloNetwork-1.7.3 Module to compute with Phylogenetic Networks 25 Sep 2018 01:36:59 UTC
River stage zero No dependents Bio-SeqIO-excel-1.7.3 sequence input/output stream from a MSExcel-formatted table 25 Sep 2018 01:30:22 UTC
River stage zero No dependents Bio-TreeIO-svggraph-1.7.3 A simple output format that converts a Tree object to an SVG output 25 Sep 2018 01:27:35 UTC
River stage zero No dependents Bio-Tree-Draw-Cladogram-1.7.3 Drawing phylogenetic trees in Encapsulated PostScript (EPS) format. 25 Sep 2018 01:26:07 UTC
River stage zero No dependents Bio-Draw-Pictogram-1.7.3 generate SVG output of Pictogram display for consensus motifs 25 Sep 2018 01:19:29 UTC
River stage zero No dependents Bio-SearchIO-hmmer-1.7.3 A parser for HMMER2 and HMMER3 output (hmmscan, hmmsearch, hmmpfam) 25 Sep 2018 00:26:52 UTC
River stage zero No dependents Bio-DB-TFBS-1.7.3 Access to a Transcription Factor Binding Site database 25 Sep 2018 00:20:12 UTC
River stage one • 1 direct dependent • 1 total dependent Bio-Align-Graphics-1.7.3 Graphic Rendering of Bio::Align::AlignI Objects 25 Sep 2018 00:17:21 UTC
River stage one • 1 direct dependent • 1 total dependent Bio-AlignIO-stockholm-1.7.3 stockholm sequence input/output stream 25 Sep 2018 00:14:27 UTC
River stage zero No dependents Bio-DB-Ace-1.7.3 Database object interface to ACeDB servers 25 Sep 2018 00:11:27 UTC
River stage zero No dependents Bio-NeXMLIO-1.7.3 stream handler for NeXML documents 11 Sep 2018 18:47:25 UTC
River stage zero No dependents Bio-Tools-Run-Alignment-Clustalw-1.7.4 Object for the calculation of a multiple sequence alignment from a set of unaligned sequences or alignments using the Clustalw program 11 Jul 2018 14:57:04 UTC
River stage zero No dependents Bio-Tools-Run-Alignment-TCoffee-1.7.4 Object for the calculation of a multiple sequence alignment from a set of unaligned sequences or alignments using the TCoffee program 09 Jul 2018 18:31:30 UTC
River stage one • 1 direct dependent • 1 total dependent Bio-Tools-Phylo-PAML-1.7.3 Parses output from the PAML programs codeml, baseml, basemlg, codemlsites and yn00 01 Jul 2018 12:36:38 UTC
River stage zero No dependents Bio-SearchIO-blastxml-1.70 A SearchIO implementation of NCBI Blast XML parsing. 04 Jan 2018 02:12:33 UTC
River stage zero No dependents PrimerView-1.3.0.1 batch and single primer sequence maps 09 Jul 2017 17:48:17 UTC
River stage zero No dependents Bio-MLST-Check-2.1.1706216 Multilocus sequence type checking using blast 03 Mar 2017 16:23:59 UTC
River stage zero No dependents GBrowse-2.56 The GMOD Generic Genome Browser 15 Jan 2017 21:29:11 UTC
River stage one • 2 direct dependents • 2 total dependents Bio-Graphics-2.40 Generate GD images of Bio::Seq objects 16 Dec 2016 04:50:36 UTC
River stage one • 1 direct dependent • 3 total dependents Bio-Coordinate-1.007001 Methods for dealing with genomic coordinates. 15 Dec 2016 05:03:14 UTC
River stage zero No dependents PrimerMap-1.3 Primer map from sequence and primer positions 06 Dec 2016 15:41:59 UTC
River stage zero No dependents Bio_AssemblyImprovement-1.160490 Improve an assembly by scaffolding, contig ordering and gap closing. 18 Feb 2016 10:10:42 UTC
River stage zero No dependents Bio-SamTools-1.43 Perl interface to SamTools library for DNA sequencing 12 Feb 2016 19:33:32 UTC
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