NAME

order_contigs_with_abacas - Given an assembly and a reference, order the contigs

VERSION

version 1.160490

Given an assembly and a reference, order the contigs.

order_contigs_with_abacas -a contigs.fa -c my_reference.fa

# This help message
order_contigs_with_abacas -h

Andrew J. Page <ap13@sanger.ac.uk>

This is free software, licensed under:

The GNU General Public License, Version 3, June 2007

To install Bio::AssemblyImprovement, copy and paste the appropriate command in to your terminal.

cpanm Bio::AssemblyImprovement

perl -MCPAN -e shell
install Bio::AssemblyImprovement

For more information on module installation, please visit the detailed CPAN module installation guide.

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