NAME

fqlen.pl - A demo implementation to filter fastx files by length

VERSION

version 1.12.0

fqc [options] [FILE1 FILE2 FILE3...]

A program to filter sequences by minimum/maximum lengths. Can process multiple files and rename the produced sequences.

-a, --abspath: Print the absolute path of the filename (the absolute path is always the table key, but if relative paths are supplied, they will be printed).
-m, --min INT: Minimum length to print a sequence
-x, --max INT: Maximum length to print a sequence
-l, --len: Add read length as comment
-f, --fasta: Force FASTA output (default: as INPUT)
-w, --fasta-width INT: Paginate FASTA sequences (default: no)
-n, --namescheme: Sequence name scheme:
-p, --prefix STR: Use as sequence name prefix this string
-c, --strip-comment: Remove sequence comment (default: no)
--verbose: Add verbose feedback on % of printed reads

Andrea Telatin <andrea@telatin.com>

This is free software, licensed under:

The MIT (X11) License

To install FASTX::Reader, copy and paste the appropriate command in to your terminal.

cpanm FASTX::Reader

perl -MCPAN -e shell
install FASTX::Reader

For more information on module installation, please visit the detailed CPAN module installation guide.

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