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Pheno-Ranker-1.08
⭐ Starred 4

Changes for version 1.08 - 2025-05-01

  • Refactored internals to split configuration, context, compare, ranking, and graph helpers
  • Added Matrix Market output (--matrix-format mtx) and graph edge filtering options
  • Use Perl-versioned Inline cache directories to avoid stale compiled objects on CPAN testers
  • Canonicalize nested arrays by meaningful content to avoid order-only differences in complex JSON
  • Renamed configuration keys to indexed_terms, index_regex, and identity_paths; legacy names remain supported
  • Added default first-level array identities for generic JSON (format: JSON) when identity_paths is absent
  • bff-pxf-plot:
    • Improved plot aesthetics and readability while preserving the dependencies
  • QR-code utils:
    • Updated PDF template

Documentation

pheno-ranker:
bff-pxf-simulator:
csv2pheno-ranker:

Modules

Pheno::Ranker
A module that performs semantic similarity in PXF/BFF data structures and beyond (JSON|YAML)

Provides

Ontologies
in utils/bff_pxf_simulator/Ontologies.pm
Pheno::Ranker::CLI
in lib/Pheno/Ranker/CLI.pm
Pheno::Ranker::Compare
in lib/Pheno/Ranker/Compare.pm
Pheno::Ranker::Compare::Alignment
in lib/Pheno/Ranker/Compare/Alignment.pm
Pheno::Ranker::Compare::Encoding
in lib/Pheno/Ranker/Compare/Encoding.pm
Pheno::Ranker::Compare::Matrix
in lib/Pheno/Ranker/Compare/Matrix.pm
Pheno::Ranker::Compare::Ontology
in lib/Pheno/Ranker/Compare/Ontology.pm
Pheno::Ranker::Compare::Prepare
in lib/Pheno/Ranker/Compare/Prepare.pm
Pheno::Ranker::Compare::Prune
in lib/Pheno/Ranker/Compare/Prune.pm
Pheno::Ranker::Compare::Rank
in lib/Pheno/Ranker/Compare/Rank.pm
Pheno::Ranker::Compare::Remap
in lib/Pheno/Ranker/Compare/Remap.pm
Pheno::Ranker::Config
in lib/Pheno/Ranker/Config.pm
Pheno::Ranker::Context
in lib/Pheno/Ranker/Context.pm
Pheno::Ranker::Graph
in lib/Pheno/Ranker/Graph.pm
Pheno::Ranker::IO
in lib/Pheno/Ranker/IO.pm
Pheno::Ranker::Metrics
in lib/Pheno/Ranker/Metrics.pm
Pheno::Ranker::Options
in lib/Pheno/Ranker/Options.pm

Other files