AUTHOR
Luis M. Rodriguez-R < lmrodriguezr at gmail dot com >
DESCRIPTION
Groups loci listed in GFF version 3, and produces a CSV file with the IDs of the grouped loci (one line per group).
LICENSE
This script is distributed under the terms of The Artistic License. See LICENSE.txt for details.
SYNOPSIS
perl polloc_group.pl arguments
The arguments must be in the following order:
- Configuration
-
The configuration file (a .bme or .cfg file).
- Input GFF
-
A path to the GFF file containing the loci to be grouped.
- Output CSV
-
A path to the CSV file to be generated.
- Inseqs
-
All the following arguments will be treated as input files. Each file is assumed to contain a genome (that can contain one or more sequence) in [multi-]fasta format.
Run perl polloc_vntrs.pl without arguments to see the help message.