/ 
Bio-Biblio-1.70
River stage zero No dependents
/ Bio::Biblio::MedlineArticle

NAME

Bio::Biblio::MedlineArticle - representation of a MEDLINE article

VERSION

version 1.70

SYNOPSIS

$obj = Bio::Biblio::MedlineArticle->new(-mesh_headings =>
                                          #array ref of hashes
                                       );

# how are Mesh terms stored:
use Data::Dumper;
print Data::Dumper->Dump ( [$obj->mesh_headings], ['MeshHeadings']);

#It produces (something like) this:
#'MeshHeadings' => [
#       { 'descriptorName' => 'Adult' },
#       { 'descriptorName' => 'Cardiovascular Diseases',
#         'subHeadings'    => [ { 'subHeading' => 'etiology' },
#                               { 'majorTopic' => 'Y',
#                                 'subHeading' => 'mortality' } ] },
#       { 'descriptorName' => 'Child Development',
#         'subHeadings'    => [ { 'majorTopic' => 'Y',
#                                 'subHeading' => 'physiology' } ] },
#       { 'descriptorName' => 'Human' },
#      ]

DESCRIPTION

A storage object for a MEDLINE article. See its place in the class hierarchy in http://www.ebi.ac.uk/~senger/openbqs/images/bibobjects_perl.gif

Attributes

The following attributes are specific to this class (however, you can also set and get all attributes defined in the parent classes):

affiliation
chemicals                      type: array ref of hashes
citation_owner
comment_ins                    type: array ref of hashes
comment_ons                    type: array ref of hashes
date_of_electronic_publication
erratum_fors                   type: array ref of hashes
erratum_in                     type: array ref of hashes
gene_symbols
general_notes                  type: array ref of hashes
grant_list_complete
grants                         type: array ref of hashes
medline_date
medline_id
medline_page
mesh_headings                  type: array ref of hashes
number_of_references
original_report_ins            type: array ref of hashes
other_abstracts                type: array ref of hashes
other_ids                      type: array ref of hashes
other_languages
pmid
republished_froms              type: array ref of hashes
republished_ins                type: array ref of hashes
retraction_ins                 type: array ref of hashes
retraction_ofs                 type: array ref of hashes
season
status
summary_for_patients_ins       type: array ref of hashes
update_ins                     type: array ref of hashes
update_ofs                     type: array ref of hashes
vernacular_title

SEE ALSO

  • OpenBQS home page

    http://www.ebi.ac.uk/~senger/openbqs/

  • Comments to the Perl client

    http://www.ebi.ac.uk/~senger/openbqs/Client_perl.html

FEEDBACK

Mailing lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

bioperl-l@bioperl.org                  - General discussion
http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Support

Please direct usage questions or support issues to the mailing list: bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Reporting bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

https://redmine.open-bio.org/projects/bioperl/

LEGAL

Authors

Martin Senger <senger@ebi.ac.uk>

Heikki Lehvaslaiho <heikki@bioperl.org>

This software is Copyright (c) by 2002 European Bioinformatics Institute and released under the license of the same terms as the perl 5 programming language system itself