NAME

Bio::DB::GFF::Homol -- A segment of DNA that is homologous to another

SYNOPSIS

See Bio::DB::GFF.

DESCRIPTION

Bio::DB::GFF::Homol is a named subtype of Bio::DB::GFF::Segment. It inherits all the methods of its parent, and was created primarily to allow for isa() queries and for compatibility with Ace::Sequence::Homol.

A Homol object is typically returned as the method result of the Bio::DB::GFF::Feature->target() method.

METHODS

name

            

              
              
Title   : name
Usage   : $name = $homol->name
Function: get the ID of the homology object
Returns : a string
Args    : none
Status  : Public
            
          

asString

            

              
              
Title   : asString
Usage   : $name = $homol->asString
Function: same as name(), for operator overloading
Returns : a string
Args    : none
Status  : Public
            
          

id

            

              
              
Title   : id
Usage   : $id = $homol->id
Function: get database ID in class:id format
Returns : a string
Args    : none
Status  : Public
            
          

BUGS

This module is still under development.

SEE ALSO

bioperl, Bio::DB::GFF, Bio::DB::RelSegment

AUTHOR

Lincoln Stein <lstein@cshl.org>.

Copyright (c) 2001 Cold Spring Harbor Laboratory.

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself.