NAME
Bio::DB::Persistent::PrimarySeq - Proxy object for database PrimarySeq representations
SYNOPSIS
Give standard usage here
DESCRIPTION
This is a proxy object which will ferry calls to/from database for the heavy stuff (sequence data) while it stores the simple attributes in memory. This object is obtained from a DBAdaptor.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated.
bioperl-l@bio.perl.orgSupport
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via email or the web:
bioperl-bugs@bio.perl.org
http://redmine.open-bio.org/projects/bioperl/AUTHOR - Hilmar Lapp, Ewan Birney
Email hlapp at gmx.net Based in idea largely on Bio::DB::PrimarySeq by Ewan Birney.
Describe contact details here
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
seq
Title : seq
Usage :
Function: Overridden from Bio::PrimarySeq::seq to allow for lazy loading.
Example :
Returns :
Args :subseq
Title : subseq
Usage :
Function: Overridden from Bio::PrimarySeq::subseq to allow for intelligent
database queries or delegation to the sequence object.
Example :
Returns :
Args :seq_has_changed
Title : seq_has_changed
Usage : $obj->seq_has_changed($newval)
Function:
Example :
Returns : TRUE or FALSE
Args : new value (TRUE or FALSE, optional)_seq_is_fetched
Title : _seq_is_fetched
Usage : $obj->_seq_is_fetched($newval)
Function:
Example :
Returns : TRUE or FALSE
Args : new value (TRUE or FALSE, optional)