NAME

Bio::Das::ProServer::SourceAdaptor::simpledb - Builds simple DAS features from a database

VERSION

$LastChangedRevision: 687 $

SYNOPSIS

Build simple segment:start:stop features from a basic database table structure:

segmentid,featureid,start,end,type,note,link

DESCRIPTION

SUBROUTINES/METHODS

capabilities

build_features - Return an array of features based on a query given in the config file

my @aFeatures = $oSourceAdaptor->build_features({
                                                 segment => $sSegmentId,
                                                 start   => $iSegmentStart, # Optional
                                                 end     => $iSegmentEnd,   # Optional
                                                 dsn     => $sDSN,          # if used as part of a hydra
                                                });
=head1 DIAGNOSTICS

CONFIGURATION AND ENVIRONMENT

[mysource]
adaptor   = simpledb
transport = dbi
dbhost    = mysql.example.com
dbport    = 3308
dbname    = proserver
dbuser    = proserverro
dbpass    = topsecret
dbtable   = mytable

Or for SourceHydra use:
[mysimplehydra]
adaptor   = simpledb           # SourceAdaptor to clone
hydra     = dbi                # Hydra implementation to use
transport = dbi
basename  = hydra              # dbi: basename for db tables containing servable data
dbname    = proserver
dbhost    = mysql.example.com
dbuser    = proserverro
dbpass    = topscret

DEPENDENCIES

Bio::Das::ProServer::SourceAdaptor

INCOMPATIBILITIES

BUGS AND LIMITATIONS

AUTHOR

$Author: Roger M Pettett$

LICENSE AND COPYRIGHT

This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>.