NAME
Bio::FastParsers::Hmmer::DomTable - Front-end class for tabular HMMER domain parser
VERSION
version 0.221230
SYNOPSIS
# open and parse HMMER domain report in tabular format
my
$infile
=
'test/hmmer.domtblout'
;
my
$report
= DomTable->new(
file
=>
$infile
);
# loop through hits
while
(
my
$hit
=
$hit
->next_hit) {
my
(
$target_name
,
$evalue
) = (
$hit
->target_name,
$hit
->evalue);
# ...
}
DESCRIPTION
# TODO
ATTRIBUTES
file
Path to HMMER domain report file in tabular format (--domtblout) to be parsed
METHODS
next_hit
Shifts the first Hit of the report off and returns it, shortening the report by 1 and moving everything down. If there are no more Hits in the report, returns undef
.
# $report is a Bio::FastParsers::Hmmer::Table
while
(
my
$hit
=
$report
->next_hit) {
# process $hit
# ...
}
This method does not accept any arguments.
AUTHOR
Denis BAURAIN <denis.baurain@uliege.be>
CONTRIBUTOR
Arnaud DI FRANCO <arnaud.difranco@gmail.com>
COPYRIGHT AND LICENSE
This software is copyright (c) 2013 by University of Liege / Unit of Eukaryotic Phylogenomics / Denis BAURAIN.
This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.