NAME

Bio::Gonzales::AV - analysis project utils

SYNOPSIS

use Bio::Gonzales::AV
  qw(
    catfile
    nfi
    analysis_version
    path_to
    analysis_path
    gonzlog
    gonzconf
    iof
    gonzc
    gonzl
    gonz_iterate
    gonzsys
    analysis_name
    gsx
    gonzsys_pipe
    gsxp
    yes_or_die
  );

SUBROUTINES

msg(@stuff)

say @stuff to STDERR.

path_to($filename)

Locate the root of the project and prepend it to the $filename.

iof()

get access to the IO files config file. Use like

my $protein_files = iof()->{protein_files}

nfi($filename)

Prepend the current analysis version diretory to the filename.

catfile($path, $file)

make them whole again...

SEE ALSO

AUTHOR

jw bargsten, <joachim.bargsten at wur.nl>