NAME

Bio::Gonzales::AV - analysis project utils

SYNOPSIS

use Bio::Gonzales::AV qw(catfile nfi $ANALYSIS_VERSION iof path_to analysis_path msg error debug);

SUBROUTINES

msg(@stuff)

say @stuff to STDERR.

path_to($filename)

Locate the root of the project and prepend it to the $filename.

iof()

get access to the IO files config file. Use like

my $protein_files = iof()->{protein_files}

nfi($filename)

Prepend the current analysis version diretory to the filename.

catfile($path, $file)

make them whole again...

SEE ALSO

AUTHOR

jw bargsten, <joachim.bargsten at wur.nl>