NAME

Bio::Gonzales::Search::IO::BLAST

SYNOPSIS

            

              
              
Bio::Gonzales::Search::IO::BLAST qw(makeblastdb instantblast)
            
          

DESCRIPTION

OPTIONS

SUBROUTINES

$db_location = makeblastdb(\%config)

Creates a blast database with the config options supplied. Config options are:

            

              
              
%config = (
    'seq_file!'  => undef,
    title        => 'basename of seq_file',
    parse_seqids => 1,
    hash_index   => 1,
    'alphabet!'  => 'n(ucleotide)? || p(rotein)? || d(na)? || a(a)?',
    db_prefix    => 'basename of seq_file.bdb',
    wd           => './',
);
            
          

Options with ! are required.

SEE ALSO

AUTHOR

jw bargsten, <joachim.bargsten at wur.nl>