NAME

Bio::Gonzales::Seq::Filter - filter sequence data

SYNOPSIS

use Bio::Gonzales::Seq::Filter qw(clean_pep_seq clean_dna_seq clean_rna_seq);

DESCRIPTION

SUBROUTINES

$seqs = clean_dna_seq(\@seqs!, \%config)

Do some cleaning, substitute invalid nucleotides with N, remove the description of the sequence objects.

clean_dna_seq leaves the sequence object description untouched if

%config = ( no_desc => 0 );

$seqs = clean_pep_seq(\@seqs!, \%config)

$seqs = clean_rna_seq(\@seqs!, \%config)

SEE ALSO

AUTHOR

jw bargsten, <jwb at cpan dot org>