NAME

Bio::Grid::Run::SGE::Util::Blast - basic blast utitlity functions for cluster-wide operations

SYNOPSIS

            

              
              
use Bio::Grid::Run::SGE::Util::Blast qw(formatdb);
            
          

DESCRIPTION

OPTIONS

SUBROUTINES

formatdb(\%config)

formatdb takes the following parameters:

            

              
              
%config = (
    db_seq_files => 'sequence files used for db creation',
    input_files? => 'is used for db creation if seq_db_files is not defined',
    blast_db_name => 'database name',
    db_type => 'database type',
    blast_db_dir => 'directory for blast database',
    no_prompt => 0, #don't ask any questions, just do it
)
            
          

SEE ALSO

AUTHOR

jw bargsten, <joachim.bargsten at wur.nl>