NAME
Bio::Polloc::Rule::crispr - A rule of type CRISPR
DESCRIPTION
Runs CRISPRFinder v3 to search CRISPRs
AUTHOR - Luis M. Rodriguez-R
Email lmrodriguezr at gmail dot com
APPENDIX
Methods provided by the package
new
Generic initialization method.
execute
Runs CRISPRfinder and parses the output.
Arguments
Returns
An array reference populated with Bio::Polloc::Locus::crispr objects
stringify_value
Stringifies the requested value
value
- Arguments
-
Value (str or hashref or arrayref). The supported keys are:
- Returns
-
Value (hashref or
undef
).
INTERNAL METHODS
Methods intended to be used only within the scope of Bio::Polloc::*
_parameters
_executable
Attempts to find the CRISPRfinder script.
_qualify_value
Implements the _qualify_value()
from the Bio::Polloc::RuleI interface
Return
Value (ref-to-hash or undef)
_initialize
2 POD Errors
The following errors were encountered while parsing the POD:
- Around line 57:
Expected '=item *'
- Around line 67:
Expected '=item *'