NAME

Bio::Roary::External::Blastp - Wrapper around NCBIs blastp command

VERSION

version 3.13.0

SYNOPSIS

Wrapper around NCBIs blastp command

use Bio::Roary::External::Blastp;

my $blast_database= Bio::Roary::External::Blastp->new(
  fasta_file => 'contigs.fa',
  blast_database => 'db',
  exec       => 'blastp',
  output_file => 'results.out'
);

$blast_database->run();

METHODS

result_file

Returns the path to the results file

AUTHOR

Andrew J. Page <ap13@sanger.ac.uk>

COPYRIGHT AND LICENSE

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

The GNU General Public License, Version 3, June 2007