NAME

Bio::SeqReader - Classes for reading sequence data.

SYNOPSIS

            

              
              
use Bio::SeqReader;
# Read a FASTA file from stdin
my $in = new Bio::SeqReader::Fasta();
while ( my $so = $in->next() ) {
    . . .
}
# Read a FASTQ file from an IO::File filehandle
my $fh = new IO::File( 'foo.fastq' );
my $in = new Bio::SeqReader::Fastq( fh => $fh );
while ( my $so = $in->next() ) {
    . . .
}
# Filehandles created by IO::Uncompress::AnyUncompress are compatible with
# IO::File filehandles.
my $fh = new IO::Uncompress::AnyUncompress( 'foo.fastq.gz' );
my $in = new Bio::SeqReader::Fastq( fh => $fh );
while ( my $so = $in->next() ) {
    . . .
}
            
          

DESCRIPTION

The Bio::SeqReader package provides classes specifically for reading sequence data.

EXPORT

None by default.

SEE ALSO

Bio::SeqReader::Fasta, Bio::SeqReader::FastaRecord, Bio::SeqReader::Fastq, Bio::SeqReader::FastqRecord

AUTHOR

John A. Crow, <jac_at_cpan_dot_org>

COPYRIGHT AND LICENSE

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself, either Perl version 5.10.0 or, at your option, any later version of Perl 5 you may have available.

            

              
              
Copyright (C) 2012 by John A. Crow.
Copyright (C) 2012 by National Center for Genome Resources.