NAME

Bio::Tradis - Bio-Tradis contains a set of tools to analyse the output from TraDIS analyses. For more information on the TraDIS method, see http://genome.cshlp.org/content/19/12/2308

VERSION

version 1.4.5

SYNOPSIS

Bio-Tradis provides functionality to:

detect TraDIS tags in a BAM file - Bio::Tradis::DetectTags
add the tags to the reads - Bio::Tradis::AddTagsToSeq
filter reads in a FastQ file containing a user defined tag - Bio::Tradis::FilterTags
remove tags - Bio::Tradis::RemoveTags
map to a reference genome - Bio::Tradis::Map
create an insertion site plot file - Bio::Tradis::TradisPlot

Most of these functions are available as standalone scripts or as perl modules.

AUTHOR

Carla Cummins <path-help@sanger.ac.uk>

COPYRIGHT AND LICENSE

This is free software, licensed under:

The GNU General Public License, Version 3, June 2007

To install Bio::Tradis, copy and paste the appropriate command in to your terminal.

cpanm

cpanm Bio::Tradis

CPAN shell

perl -MCPAN -e shell
install Bio::Tradis

For more information on module installation, please visit the detailed CPAN module installation guide.

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NAME

VERSION

SYNOPSIS

AUTHOR

COPYRIGHT AND LICENSE

Module Install Instructions