NAME
Bioinfo::App::Cmd::Blast::Cmd::SplitSubmit - submit blast after splitting a fasta file into multiple files;
VERSION
version 0.1.15
SYNOPSIS
use Bioinfo::App::Cmd::Blast::Cmd::SplitSubmit;
Bioinfo::App::Cmd::Blast::Cmd::SplitSubmit->new_with_cmd;DESCRIPTION
this module splits a fasta file into multiple files, then submit these files on parallel.
ATTRIBUTES
input
The input file is a file of fasta format
num
number of files that the fasta file will be split
db
the database that blast will use
type
blast
cpu
max_target_seqs
evalue
outfmt
outdir
prefix
the prefix of the split file
METHODS
execute
AUTHOR
Yan Xueqing <yanxueqing621@163.com>
COPYRIGHT AND LICENSE
This software is copyright (c) 2017 by Yan Xueqing.
This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.