NAME
Bioinfo::App::Cmd::Blast::Cmd::SplitSubmitB - submit blast after splitting a fasta file into multiple files;
VERSION
version 0.1.15
SYNOPSIS
use Bioinfo::App::Cmd::Blast::Cmd::SplitSubmitB;
Bioinfo::App::Cmd::Blast::Cmd::SplitSubmit->new_with_cmd;
example:
biotools blast splitsubmitb -c 1 -d /path/db -i ./ -m 2 -p 7 -s 10 -n blasttDESCRIPTION
this module splits a fasta file into multiple files, then submit these files on parallel.
ATTRIBUTES
indir
The input file is a file of fasta format
split_num
number of files that the fasta file will be split
blast_cpu
the cpu number will be set on blast
parallel_task_num
the task number will be running at the same time
db
the database that blast will use
type
blast
the subcomand in blast+, such as [blastp blastx],default:blastp
queue_name
the name of PBS queue
max_target_seqs
the parameter used in blast
outfmt
parameter used in blast
prefix
the prefix of the split file
evalue
parameter passed to blast
METHODS
execute
AUTHOR
Yan Xueqing <yanxueqing621@163.com>
COPYRIGHT AND LICENSE
This software is copyright (c) 2017 by Yan Xueqing.
This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.