/ 
CracTools-1.251
River stage one • 1 direct dependent • 1 total dependent
/ CracTools::Output

NAME

CracTools::Output - A module to manage CracTools output files.

VERSION

version 1.251

SYNOPSIS

# Creating a default output object.
# Everything will be print to the standard output
my $output = CracTools::Output->new();

# Print nice headers
my $output->printHeaders(version => '1.01',summary => 'blabla', args => @ARGV);

# This will print "foo\tbar\n"
$output->printLine('foo','bar');

# Using semicolon as separator charcater
my $output = CracTools::Output->new(sep => ';');

# Print into a file
my $output = CracTools::Output->new(file => 'foo.bar');

DESCRIPTION

CracTools::Output is a simple tool to generate Char-Separated files.

METHODS

new

Arg [sep]  : (Optional) Character to use as separator for columns
Arg [file] : (Optional) String - Ouput file, if not specified
             CracTools::Output prints to STDOUT.
Arg [NA]   : (Optional NA string to use when for undef variables

Example     : $output = CracTools::Output->new(file => 'output.txt', sep => '\t');
Description : Create a new CracTools::Output object
ReturnType  : CracTools::Output

printHeaders

Arg [version]  : (Optional) Version number of the script that is calling "printHeaders" method.
Arg [summary]  : (Optional) String - Summary text to print in headers (can have multiple lines

Example     : $output->printHeaders(version => $version, summary => "Found $n reads");
Description : Print headers to the output stream with CracTools-core version, date, name of calling script.

printHeaderLine

Arg [1] : Array of strings

Example     : $output->printHeaderLine("Read Id","Read_seq","Nb_occ");
Description : Print header line to the file (with a "# " append to the start of the line)

printLine

Arg [1] : Array of strings

Example     : $output->printLine("Read Id","Read_seq","Nb_occ");
Description : Print a line to the file, each string of the array parameter is print
              with the separator defined for the output.

printOutput

Arg [1] : String - Value to print

Example     : $output->printLine("This is a line");
Description : Print the string in parameter to the output stream.

printlnOutput

Arg [1] : String - Value to print

Example     : $output->printLine("This is a line");
Description : Print the string in parameter to the output stream with an extra "\n" at the end of the string.

AUTHORS

  • Nicolas PHILIPPE <nphilippe.research@gmail.com>

  • Jérôme AUDOUX <jaudoux@cpan.org>

  • Sacha BEAUMEUNIER <sacha.beaumeunier@gmail.com>

COPYRIGHT AND LICENSE

This software is Copyright (c) 2017 by IRMB/INSERM (Institute for Regenerative Medecine and Biotherapy / Institut National de la Santé et de la Recherche Médicale) and AxLR/SATT (Lanquedoc Roussilon / Societe d'Acceleration de Transfert de Technologie).

This is free software, licensed under:

The GNU Affero General Public License, Version 3, November 2007