NAME

Data::Type::Collection::Bio - datatypes for biology

SYNOPSIS

            

              
              
       print "found dna" if shift and is BIO::DNA;
valid 'AUGGGAAAU',      BIO::RNA;
valid 'ATGCAAAT',       BIO::DNA;
try
{
        typ ENUM( qw(DNA RNA) ), \( my $a, my $b );
        print "a is typ'ed" if istyp( $a );
        $a = 'DNA';             # $alias only accepts 'DNA' or 'RNA'
        $a = 'RNA';
        $a = 'xNA';             # throws exception
        untyp( $alias );
}
catch Data::Type::Exception with
{
        printf "Expected '%s' %s at %s line %s\n",
                $e->value,
                $e->type->info,
                $e->file,
                $e->line;
};
valid 'AUGGGAAAU', BIO::RNA;
valid 'ATGCAAAT',  BIO::DNA;
            
          

DESCRIPTION

Everything that is related to biological matters.

[Note] Also have a glimpse on 'Chem' collection.

TYPES

BIO::CODON (since 0.01.03)

DNA/RNA triplet

Filters

strip \s

Usage

triplet of DNA or RNA

BIO::DNA (since 0.01.03)

dna fragment

Filters

strip \s

Usage

sequence of [ATGC]

BIO::RNA (since 0.01.03)

RNA fragment

Filters

strip \s

Usage

sequence of [ATUC]

INTERFACE

CONTACT

Sourceforge http://sf.net/projects/datatype is hosting a project dedicated to this module. And I enjoy receiving your comments/suggestion/reports also via http://rt.cpan.org or http://testers.cpan.org.

AUTHOR

Murat Uenalan, <muenalan@cpan.org>

cpanm Data::Type

perl -MCPAN -e shell
install Data::Type