NAME

Prospect::Options -- Package for representing options

$Id: Options.pm,v 1.8 2003/11/04 01:01:32 cavs Exp $

SYNOPSIS

use Prospect::Options;
use Prospect::LocalClient;
use Bio::SeqIO;
                                                                                                                                   
my $in = new Bio::SeqIO( -format=> 'Fasta', '-file' => $ARGV[0] );
my $po = new Prospect::Options( seq=>1, svm=>1, global_local=>1,
                templates=>[qw(1bgc 1alu 1rcb 1eera)] );
my $pf = new Prospect::LocalClient( {options=>$po} );

while ( my $s = $in->next_seq() ) {
  my @threads = $pf->thread( $s );
}

DESCRIPTION

Prospect::Options represent options.