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Bio-EnsEMBL-112.0.0_57
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/ Bio::EnsEMBL::DensityPlot::BinValueSet

LICENSE

Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute Copyright [2016-2024] EMBL-European Bioinformatics Institute

Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at

http://www.apache.org/licenses/LICENSE-2.0

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NAME

Bio::EnsEMBL::DensityPlot::BinValueSet

SYNOPSIS

DESCRIPTION

METHODS

add_binvalue

Title   : add_binValue
Usage   :
Function:
Example :
Returns : 
Args    :

get_binvalues

Title   : get_binvalues
Usage   : my @binvalue_objects = $BVSet->get_binvalues
Function: scales all the binvalues by the scale_factor and returns them.
Example :
Returns : array of BinValue objects 
Args    : none

position

Title   : position
Usage   : $obj->position($newval)
Function: 
Returns : value of position
Args    : newvalue (optional)

label

Title   : label
Usage   : $obj->label($newval)
Function: 
Returns : value of label
Args    : newvalue (optional)

label2

Title   : label2
Usage   : $obj->label2($newval)
Function: 
Returns : value of label2
Args    : newvalue (optional)

color

Title   : color
Usage   : $obj->color($newval)
Function: 
Returns : value of color
Args    : newvalue (optional)

shape

Title   : shape
Usage   : $obj->shape($newval)
Function: 
Returns : value of shape
Args    : newvalue (optional)

stretch

Title   : stretch
Usage   : $obj->stretch($newval)
Function: gets/sets a boolean for whether we should stretch the data over the
range (i.e. from min to max rather than absolute numbers).
Returns : value of _stretch
Args    : newvalue (optional)

scale_to_fit

Title   : scale_to_fit
Usage   : $obj->scale_to_fit($newval)
Function: gets/sets the number that the BinValues are to be scaled against -
i.e. the greatest BinValue->value will be scaled to this number, and the rest
scaled in proportion.
Returns : scale_to_fit value
Args    : newvalue (optional)

_store_biggest

Title   : _store_biggest
Usage   : $self->_store_biggest($newval)
Function: internal method for storing the largest BinValue->value in this set.
Returns : biggest value seen so far
Args    : value

_store_smallest

Title   : _store_smallest
Usage   : $self->_store_smallest($newval)
Function: internal method for storing the smallest BinValue->value in this set.
Returns : smallest value seen so far
Args    : value